Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20365
         (744 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    25   0.84 
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    25   0.84 
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   2.0  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   3.4  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    21   7.9  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   7.9  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   7.9  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   7.9  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   7.9  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    21   7.9  

>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 596 LYLHWNRMLGQQLVWQVYRMPVVLWW 519
           +YLH   MLG Q ++ +  + VV++W
Sbjct: 242 VYLHLAVMLGFQDIYMIVYIIVVIFW 267


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 596 LYLHWNRMLGQQLVWQVYRMPVVLWW 519
           +YLH   MLG Q ++ +  + VV++W
Sbjct: 242 VYLHLAVMLGFQDIYMIVYIIVVIFW 267


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 627 QLALVFSTPTSGFSA-PQASTATTIVQPTLPTFGQTTAAP 743
           Q A  +S P   +S      T TT++ PT+  +  T++ P
Sbjct: 292 QQATPYSAPGPTYSTWSTVQTPTTVMSPTINCWSLTSSPP 331


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/26 (26%), Positives = 10/26 (38%)
 Frame = +2

Query: 308 QFCIWC*NNKCSTFTIFISIDNDYNC 385
           ++  WC  N C      +   N Y C
Sbjct: 98  EYVDWCSTNPCENQATCVQNKNQYQC 123


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -3

Query: 361 DENGEGAAFV 332
           DENGEG A+V
Sbjct: 370 DENGEGGAWV 379


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -2

Query: 287 CGTSEAECCFVSVLDPPNNGFEASPL 210
           CG    + CF     PP   FE+ P+
Sbjct: 427 CGLRNGDPCFFHDTIPPYLFFESPPV 452


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -2

Query: 287 CGTSEAECCFVSVLDPPNNGFEASPL 210
           CG    + CF     PP   FE+ P+
Sbjct: 427 CGLRNGDPCFFHDTIPPYLFFESPPV 452


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -2

Query: 287 CGTSEAECCFVSVLDPPNNGFEASPL 210
           CG    + CF     PP   FE+ P+
Sbjct: 427 CGLRNGDPCFFHDTIPPYLFFESPPV 452


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -2

Query: 287 CGTSEAECCFVSVLDPPNNGFEASPL 210
           CG    + CF     PP   FE+ P+
Sbjct: 427 CGLRNGDPCFFHDTIPPYLFFESPPV 452


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 241 GSNTETKQHSASLVPQQVHQYLAVLHL 321
           G+N    + S S  P Q++ ++  +HL
Sbjct: 183 GTNNNNSKSSQSSNPPQIYPWMKRVHL 209


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,017
Number of Sequences: 336
Number of extensions: 3157
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19819879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)