Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20365
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    31   0.13 
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    27   2.8  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    25   8.6  

>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 12/17 (70%), Positives = 17/17 (100%)
 Frame = +2

Query: 581 SSANTGFSFGKPASTTA 631
           ++AN+GFSFGKPA+T+A
Sbjct: 220 TTANSGFSFGKPATTSA 236



 Score = 31.1 bits (67), Expect = 0.17
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = +2

Query: 581 SSANTGFSFGKPAST 625
           SSA TGFSFGKPA+T
Sbjct: 292 SSAGTGFSFGKPATT 306



 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +2

Query: 584 SANTGFSFGKPASTT 628
           S+N  F+FGKPASTT
Sbjct: 145 SSNNSFNFGKPASTT 159



 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +2

Query: 581 SSANTGFSFGKPASTTA 631
           S+  TGFSFGKPA   A
Sbjct: 264 SAPTTGFSFGKPAGQAA 280


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +3

Query: 528 HHRHSVHLPHKLLPQHSVPVQIQVLASGSRHQRQLALVFSTPTSGFSAPQ-ASTATTIVQ 704
           H  HS H P   LP+  +      +  G  H+  +   ++ PT  F+  Q  ST  T + 
Sbjct: 222 HQNHSAHTPTSYLPESFIQDFYDFVLWGHEHECLIDGSYN-PTQKFTVVQPGSTIATSLS 280

Query: 705 P 707
           P
Sbjct: 281 P 281


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 555 HKLLPQHSVPVQIQVLASGSR 617
           HK++P+H V ++  V   GSR
Sbjct: 440 HKIVPKHQVDLENYVFTEGSR 460


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,628,198
Number of Sequences: 5004
Number of extensions: 46714
Number of successful extensions: 123
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)