Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20365
(744 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600... 32 0.42
01_05_0770 - 25052100-25052525,25052718-25053042,25053220-250534... 32 0.55
07_01_0253 + 1888831-1889399,1890121-1890526,1890980-1891195,189... 31 1.3
06_01_0609 + 4404287-4405023,4405496-4405631,4405724-4405876,440... 29 2.9
07_03_1568 - 27788314-27788619,27789125-27789294,27789868-277899... 29 5.2
02_03_0190 + 16188329-16188514,16188552-16188885,16190275-161907... 29 5.2
01_05_0303 + 20647654-20647830,20647981-20648067,20648549-206487... 29 5.2
11_01_0653 - 5285718-5287094 28 6.8
05_01_0351 + 2750253-2751042,2751951-2751958,2752122-2752149,275... 28 9.0
>06_03_1283 - 28957729-28959258,28959354-28959550,28959824-28960026,
28960097-28960424,28960524-28960661,28960765-28961020,
28961529-28961626,28963104-28963367,28964395-28964584
Length = 1067
Score = 32.3 bits (70), Expect = 0.42
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = +3
Query: 516 QPPQHHRHSVHLPHKLLPQHSVPVQ---IQVLASGSRHQ 623
+PP HH H H PH + + PVQ I + S H+
Sbjct: 942 EPPHHHNHCCHEPHDQVKNDTHPVQEHSISIEESSDHHE 980
>01_05_0770 -
25052100-25052525,25052718-25053042,25053220-25053464,
25053582-25054061
Length = 491
Score = 31.9 bits (69), Expect = 0.55
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -2
Query: 575 MLGQQLVWQVYRMPVVLWWLHQR 507
+LG L+WQV+R+ V LWW +R
Sbjct: 5 LLGLALLWQVHRLLVRLWWQPRR 27
>07_01_0253 +
1888831-1889399,1890121-1890526,1890980-1891195,
1891441-1891548,1892085-1892359,1892462-1892714
Length = 608
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +3
Query: 519 PPQHHRHSVHLPHKLLPQHSVPVQIQVLASGSRHQRQLALVFSTPTSGFSAPQASTA 689
PP HHR +HL H P+ S P ++++ A+ + + Q P AP ST+
Sbjct: 7 PPSHHRLHLHL-HLHTPKPSPPRRLRLAAAAAASRLQNPTTTHYPNLPPPAPPPSTS 62
>06_01_0609 +
4404287-4405023,4405496-4405631,4405724-4405876,
4405985-4406128,4406224-4406375,4406453-4406552,
4406653-4406775,4406876-4407037,4407190-4407247,
4407324-4407502,4408294-4408402,4408567-4408637,
4408891-4408986,4409727-4409803,4410983-4411066,
4411473-4411607,4411744-4411819,4413072-4413167,
4413580-4413671,4413745-4413868,4413966-4414052
Length = 996
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +3
Query: 537 HSVHLPHKLLPQHSVPVQIQVLASGSRHQRQLALVFSTPTSGFSA 671
+++ LP KLLP+ S + IQ L G + RQL + ++ G A
Sbjct: 592 NTMDLPEKLLPRISSRMGIQRLCFGPYNYRQLQEIITSRLKGIDA 636
>07_03_1568 -
27788314-27788619,27789125-27789294,27789868-27789979,
27790063-27790117,27790201-27790316,27790731-27790812,
27790974-27791228,27791326-27791454,27791539-27791747
Length = 477
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +3
Query: 567 PQHSVPVQIQV-LASGSRHQ--RQLALVFSTPTSGFSAPQASTATTIVQPTLPTFGQ 728
PQ + ++ L +G HQ QLA + TP G SA + IV P++ FG+
Sbjct: 357 PQQEAAYECKINLLTGKTHQIRAQLAAI-GTPIVGDSAYMTAAMAAIVNPSINPFGR 412
>02_03_0190 +
16188329-16188514,16188552-16188885,16190275-16190745,
16191055-16191249,16191519-16191643,16192082-16192142,
16192774-16193023,16193129-16193279,16193594-16193902
Length = 693
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -3
Query: 613 LPEAKTCICTGTECWGSSLCGRCTECRW 530
L EAK CTG C CG T+ W
Sbjct: 250 LGEAKNYNCTGNTCKDGQECGEYTQLMW 277
>01_05_0303 +
20647654-20647830,20647981-20648067,20648549-20648719,
20649377-20649430,20650614-20650994
Length = 289
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -3
Query: 427 VKPPKGVGLFAPKP 386
+KPPKGVGL AP P
Sbjct: 241 LKPPKGVGLIAPLP 254
>11_01_0653 - 5285718-5287094
Length = 458
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +3
Query: 543 VHLPHKLLPQHSVPVQIQVLASGSRHQRQLALVFSTPTSGFSAP 674
+HL +LLP VP AS H R+L L ST + + P
Sbjct: 2 LHLRRRLLPLLRVPSSPHASASYYAHLRRLRLPLSTAAAATATP 45
>05_01_0351 +
2750253-2751042,2751951-2751958,2752122-2752149,
2754692-2754775,2755780-2757548
Length = 892
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Frame = +3
Query: 519 PPQHHRHSVHLPHKLLPQHSVPVQIQVLASG-----SRHQRQ 629
PP H RHS+ H LP +P Q A+G +HQ+Q
Sbjct: 785 PPYHLRHSIDGMHHQLPGPPLPPSYQHRAAGGVVFPGQHQQQ 826
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,881,019
Number of Sequences: 37544
Number of extensions: 344418
Number of successful extensions: 984
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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