Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20365
         (744 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17329| Best HMM Match : S-antigen (HMM E-Value=0.31)                33   0.24 
SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17)                    32   0.43 
SB_48166| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_51035| Best HMM Match : Extensin_2 (HMM E-Value=0.33)               28   9.2  
SB_37142| Best HMM Match : Peptidase_A22B (HMM E-Value=0)              28   9.2  
SB_20241| Best HMM Match : SCP (HMM E-Value=1.1)                       28   9.2  

>SB_17329| Best HMM Match : S-antigen (HMM E-Value=0.31)
          Length = 646

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 16/36 (44%), Positives = 16/36 (44%)
 Frame = -3

Query: 598 TCICTGTECWGSSLCGRCTECRWCCGGCTKDRFWAC 491
           TC   GT C      G CT CR  C  C K R W C
Sbjct: 142 TCTACGTHC--KKTTGPCTACRDVCDRCGKAR-WRC 174


>SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17)
          Length = 1038

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 20/53 (37%), Positives = 23/53 (43%)
 Frame = -3

Query: 712 RVGCTIVVAVLACGAEKPDVGVEKTKASCR*CRLPEAKTCICTGTECWGSSLC 554
           R G    V VL CGA  P  GVE +  SC  C     K       +C G +LC
Sbjct: 649 RSGLQSAVRVLTCGA--PSSGVEHSHISCSECHQQGIKGMRWQCADCEGYNLC 699


>SB_48166| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 636 LVFSTPTSGFSAPQAST-ATTIVQPTLP 716
           L+F TP+ G  AP  ST   T+  PT+P
Sbjct: 196 LIFPTPSLGTQAPPPSTGGVTLTTPTVP 223


>SB_51035| Best HMM Match : Extensin_2 (HMM E-Value=0.33)
          Length = 321

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 21/76 (27%), Positives = 26/76 (34%)
 Frame = +3

Query: 516 QPPQHHRHSVHLPHKLLPQHSVPVQIQVLASGSRHQRQLALVFSTPTSGFSAPQASTATT 695
           Q PQ + H    P + L QH        L  G     Q    F      + APQ  +   
Sbjct: 93  QQPQTYGHQQRQPAQRLAQHLGQQPPSSLPQGQYGAPQYGSQFGHAQGQYGAPQYGSQ-- 150

Query: 696 IVQPTLPTFGQTTAAP 743
              P  P+FG    AP
Sbjct: 151 -FGPASPSFGSVYGAP 165


>SB_37142| Best HMM Match : Peptidase_A22B (HMM E-Value=0)
          Length = 1019

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
 Frame = +3

Query: 558 KLLPQ--HSVPVQIQVL-ASGSRHQRQLALVFSTPTSGFSAPQASTATTIVQPTLPTFG 725
           K++P   + +P+   +L A   R      L+FS            T TT+V PTLP  G
Sbjct: 322 KMIPMTAYLLPLLSNLLYALAGRAPTYKCLIFSAKKGSRPGKPGKTTTTVVPPTLPPVG 380


>SB_20241| Best HMM Match : SCP (HMM E-Value=1.1)
          Length = 183

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 639 VFSTPTSGFSAPQASTATTIVQPTLPTFGQ 728
           V STP+SG S P     T +    LP+ GQ
Sbjct: 26  VGSTPSSGVSTPLGGPTTPVSSTVLPSGGQ 55


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,390,075
Number of Sequences: 59808
Number of extensions: 405281
Number of successful extensions: 1179
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)