Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20365
         (744 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   4.0  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   9.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.2  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +2

Query: 320 WC*NNKCSTFTIFISIDNDYNCRLW 394
           W  N  CS  T    I+ D   RLW
Sbjct: 110 WAKNENCSGITSAYKIEIDMCDRLW 134


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +3

Query: 504 LSLVQPPQHHRHSVHLPHKLLPQHSVPVQ 590
           + L  PP+H    ++  H  L  H V  Q
Sbjct: 56  MDLSSPPEHRDLPIYQSHHHLHHHQVLYQ 84


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +3

Query: 510 LVQPPQHHRHSVHLPHKLLPQHSVPVQIQVLASGSRHQRQLALVFSTPTSG 662
           L+Q     + S  L    L Q  +  Q+Q+  S    Q+ L L    P+SG
Sbjct: 163 LLQTADKKKASAPLQQLALQQQRLIQQLQITQSQYLLQQGLGLQGHNPSSG 213


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,331
Number of Sequences: 438
Number of extensions: 3933
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)