Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20365
(744 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14700.1 68417.m02259 replication control protein, putative s... 33 0.20
At4g12620.1 68417.m01988 replication control protein, putative s... 31 1.1
At3g14740.2 68416.m01864 PHD finger family protein similar to zi... 30 1.4
At3g14740.1 68416.m01863 PHD finger family protein similar to zi... 30 1.4
At1g02640.1 68414.m00214 glycosyl hydrolase family 3 protein sim... 30 1.9
At4g16015.1 68417.m02430 DC1 domain-containing protein contains ... 29 3.3
At2g35460.1 68415.m04344 harpin-induced family protein / HIN1 fa... 29 3.3
At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein c... 28 7.5
At3g45530.1 68416.m04917 DC1 domain-containing protein contains ... 27 9.9
>At4g14700.1 68417.m02259 replication control protein, putative
similar to origin recognition complex subunit 1
(Replication control protein 1) [Homo sapiens]
SWISS-PROT:Q13415
Length = 809
Score = 33.1 bits (72), Expect = 0.20
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +3
Query: 537 HSVHLPHKLLPQHSVPVQIQVLASGSRHQRQLALVFSTPTSGFSA 671
+++ LP KLLP+ S + IQ L G + RQL + ST G +A
Sbjct: 590 NTMDLPEKLLPRISSRMGIQRLCFGPYNHRQLQEIISTRLEGINA 634
>At4g12620.1 68417.m01988 replication control protein, putative
similar to origin recognition complex subunit 1
(Replication control protein 1)[Homo sapiens]
SWISS-PROT:Q13415
Length = 813
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +3
Query: 537 HSVHLPHKLLPQHSVPVQIQVLASGSRHQRQLALVFSTPTSGFSA 671
+++ LP KLLP+ S + IQ L G + QL + ST +G A
Sbjct: 595 NTMDLPEKLLPRISSRMGIQRLCFGPYNHTQLQEIISTRLNGIDA 639
>At3g14740.2 68416.m01864 PHD finger family protein similar to
zinc-finger protein BR140 [PIR|JC2069][Homo sapiens];
contains PHD-finger domain PF00628
Length = 343
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = -2
Query: 740 CCG-CLTKRWQSRLYYC--RCSTSLRC*ETRCR 651
CC L+KRW+ R Y C R + C E RC+
Sbjct: 254 CCSEVLSKRWKDRCYLCKVRRGCVIECSEMRCK 286
>At3g14740.1 68416.m01863 PHD finger family protein similar to
zinc-finger protein BR140 [PIR|JC2069][Homo sapiens];
contains PHD-finger domain PF00628
Length = 341
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = -2
Query: 740 CCG-CLTKRWQSRLYYC--RCSTSLRC*ETRCR 651
CC L+KRW+ R Y C R + C E RC+
Sbjct: 254 CCSEVLSKRWKDRCYLCKVRRGCVIECSEMRCK 286
>At1g02640.1 68414.m00214 glycosyl hydrolase family 3 protein
similar to beta-xylosidase GB:Z84377 GI:2102655 from
[Aspergillus niger]
Length = 768
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +3
Query: 540 SVHLPHKLLPQHSVPVQIQVLASGSRHQRQLALVFSTPTSGFSAPQ 677
S+ + H + S+ V ++V GSR LVFS P G AP+
Sbjct: 655 SIRVTHARCDRLSLGVHVEVTNVGSRDGTHTMLVFSAPPGGEWAPK 700
>At4g16015.1 68417.m02430 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 535
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -3
Query: 532 WCCGGCTKDRFWACPAF*FVACP 464
W CG C K+ W C A+ CP
Sbjct: 187 WKCGVCNKEINWTCGAYSCSKCP 209
>At2g35460.1 68415.m04344 harpin-induced family protein / HIN1
family protein / harpin-responsive family protein
similar to harpin-induced protein hin1 ( GI:1619321)
[Nicotiana tabacum];
Length = 238
Score = 29.1 bits (62), Expect = 3.3
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 568 GSSLCGRCTECRWCCGGC 515
G +CG + C CCGGC
Sbjct: 32 GCGICGCFSSCLLCCGGC 49
>At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein
contains Pfam PF01422: NF-X1 type zinc finger; similar
to transcriptional repressor NF-X1 (SP:Q12986) [Homo
sapiens]; similar to EST gb|T21002
Length = 1188
Score = 27.9 bits (59), Expect = 7.5
Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
Frame = -3
Query: 709 VGCTIVVAVLACGAEKPDVGVEKTKASCR*CRLPE-AKTCICTGTECWGSSLCGRCTECR 533
VG +V+ + CG + D+ K R C + A+TC + + S G CR
Sbjct: 693 VGGHVVLRNIPCGLK--DIRCTKICGKTRRCGMHACARTCHPEPCDSFNESEAGMRVTCR 750
Query: 532 WCCGGCTKDRFWACPAF*FVACPKAEL 452
CG D C A + P +L
Sbjct: 751 QKCGAPRTDCRHTCAALCHPSAPCPDL 777
>At3g45530.1 68416.m04917 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 692
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 532 WCCGGCTKDRFWACPAF*FVACPK 461
W CG C ++ W+C A+ CP+
Sbjct: 306 WRCGVCFEEIDWSCGAYSCSLCPQ 329
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,122,706
Number of Sequences: 28952
Number of extensions: 268868
Number of successful extensions: 748
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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