Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20363
         (556 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi...    26   3.2  
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    26   3.2  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    25   9.9  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    25   9.9  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    25   9.9  

>SPBC15D4.14 |taf73||TATA-binding protein associated factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +1

Query: 97  KDLYEEIITTL*SWLEEKTKVVRKRHLILRKPL 195
           + L EE++TTL + LE K K V  R+  L K L
Sbjct: 245 RPLSEEVVTTLKNLLEVKDKDVEGRNEALNKIL 277


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 40  DQLNFAIALLLKYTIAHLHKDLYEEIITTL*SW 138
           D L + IA L    I+H+H D +  +I  L +W
Sbjct: 558 DNLKYEIASLRWIYISHMHADHHAGVIGVLKAW 590


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +1

Query: 139 LEEKTKVVRKRHLILRKPLLLKVSLQKVNLQHPKFQ 246
           ++++ K +RKR L +RK    K S + +N + PK Q
Sbjct: 272 MQKEIKYLRKRKLQIRKIPNYKYSDRSLNSKTPKSQ 307


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 371 NPKLTQTDNPKAEVPKTEAPKTEALKPEAPV 463
           NP   Q+D P   +PK  A   ++  PE  V
Sbjct: 332 NPVAEQSDTPTRSLPKNYAYVAKSTSPELKV 362


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 335 EKQESLAQAELSNPKLTQTDNPKAEVPKTEAPKTEAL 445
           E  +S+ Q  +S+ K  +T   K +VP+   P T+ +
Sbjct: 171 ESAQSIEQEVISSLKDDKTVETKNDVPEVSRPSTDTI 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,654,080
Number of Sequences: 5004
Number of extensions: 25670
Number of successful extensions: 87
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)