Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20363
         (556 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0359 + 28722524-28722613,28722794-28722863,28723062-287231...    31   0.82 
11_06_0679 - 26227654-26227770,26234067-26236217                       30   1.4  
06_03_1181 - 28227746-28229115,28229130-28229307                       30   1.4  
01_06_1519 + 37942389-37943702,37944142-37944266,37944358-379444...    29   2.5  
05_04_0395 - 20921606-20921869,20921971-20922112,20922206-209223...    29   3.3  
09_06_0285 + 22030414-22030440,22031562-22031745,22031826-22032088     27   7.6  
03_06_0710 + 35676497-35677204,35677837-35677921,35679722-35679798     27   7.6  

>01_06_0359 +
           28722524-28722613,28722794-28722863,28723062-28723159,
           28724029-28724167,28724243-28724370,28724500-28724592,
           28724707-28724757,28725405-28725470,28725568-28725633,
           28725900-28725977,28726248-28726427,28726502-28726577,
           28726660-28726823,28727569-28727931
          Length = 553

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 362 ELSNPKLTQTDNPKAEVPKTEAPKTEALKPEAPVPE 469
           E+  P   + + P+ E P    P TE + P  P PE
Sbjct: 310 EIPEPVSAEEEKPQIEEPAVAVPSTEVVPPPPPKPE 345


>11_06_0679 - 26227654-26227770,26234067-26236217
          Length = 755

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 341 QESLAQAELSNPKLTQTDNPKAEVPKTEAPKTEALKP 451
           Q  + Q+ +   +L Q D P+ +VP+T+ P+ +   P
Sbjct: 207 QPHILQSNIPRTQLPQNDTPQIQVPQTQIPQIQTSLP 243


>06_03_1181 - 28227746-28229115,28229130-28229307
          Length = 515

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 341 QESLAQAELSNPKLTQTDNPKAEVPKTEAPKTEALKP 451
           Q  + Q+ +   +L Q D P+ +VP+T+ P+ +   P
Sbjct: 182 QPHILQSNIPRTQLPQNDTPQIQVPQTQIPQIQTSLP 218


>01_06_1519 +
           37942389-37943702,37944142-37944266,37944358-37944499,
           37944602-37944848,37946139-37946196,37947629-37947913,
           37947988-37948120
          Length = 767

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = +2

Query: 341 QESLAQAELSNPKL-TQTDNPKAEVPKTEAPKTEALKPEAPVPE 469
           + S  +A+   PK     D P  E  K EA   E  KP  P PE
Sbjct: 173 EASSEEAKTEEPKAEAAADEPAKEESKAEAAPAEEAKPAEPEPE 216


>05_04_0395 -
           20921606-20921869,20921971-20922112,20922206-20922330,
           20922758-20923984
          Length = 585

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +2

Query: 338 KQESLAQAELSNPKLTQTDNPKAEVP-KTEAPK-TEALKPEAPVPEA 472
           K E+ A+AE +  +  +T+ PK E P K E PK   A   E P  EA
Sbjct: 140 KAEAEAEAEAAATEEPKTEEPKTEEPAKEEEPKAAAAAAAEEPKAEA 186


>09_06_0285 + 22030414-22030440,22031562-22031745,22031826-22032088
          Length = 157

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 341 QESLAQAELSNPKLTQTDNPKAEVPKTEAPKTEALKPEAPVPE 469
           +++  +    NP   QT+N KAE    EA ++EA+     VPE
Sbjct: 51  EDTFKEHNTVNPISKQTNNQKAEGGAGEAVESEAVAGGGVVPE 93


>03_06_0710 + 35676497-35677204,35677837-35677921,35679722-35679798
          Length = 289

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +2

Query: 332 TEKQESLAQAELSNPKLTQTDNPKAEVPKTEAPKTEALKPE 454
           T K+ +    + S PK  +  NPK E P       + L P+
Sbjct: 22  TPKKSTATSKDRSTPKPRKNPNPKEEAPPPPPANNKRLNPQ 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,086,486
Number of Sequences: 37544
Number of extensions: 147111
Number of successful extensions: 401
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)