Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20363
(556 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50693| Best HMM Match : C2 (HMM E-Value=0) 29 1.9
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23) 29 2.6
SB_56215| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_46728| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_32503| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_23813| Best HMM Match : RVT_1 (HMM E-Value=0.00037) 29 3.4
SB_8085| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_48606| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_44047| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_43706| Best HMM Match : RVP (HMM E-Value=1.4) 29 3.4
SB_27011| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_25749| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_3491| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17) 28 4.5
SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
SB_41786| Best HMM Match : AT_hook (HMM E-Value=0.24) 27 7.8
SB_4263| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
SB_37674| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
SB_26305| Best HMM Match : Integrase_Zn (HMM E-Value=9.6) 27 7.8
SB_14919| Best HMM Match : MAM (HMM E-Value=0) 27 7.8
>SB_50693| Best HMM Match : C2 (HMM E-Value=0)
Length = 1049
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +2
Query: 332 TEKQESLAQAELSNPKLTQTDNPKAEVPKTEAPKTEALKPEAPVPEA 472
++K Q L P ++ + PKT++ K ++ KP++P P++
Sbjct: 811 SKKSSPNPQITLQQPTHDSLEDDGTQSPKTQSLKPQSTKPQSPKPQS 857
>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
Length = 2123
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +2
Query: 362 ELSNPKLT--QTDNPKAEVPKTEAPKTEALKPEAPVP 466
E + P+ T +T P+ PKT PK +AP+P
Sbjct: 1798 ETTTPRTTTPETTKPRTTTPKTTTPKKTTAAKKAPLP 1834
>SB_56215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1505
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 362 ELSNPKLTQTDNPKAEVPKTEAPKTEALKPEAPVP 466
E++ P T TD A P+T+AP +KP A P
Sbjct: 449 EITLPDDTPTDAEYALEPRTDAPSARRVKPSAVWP 483
>SB_46728| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 288
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 362 ELSNPKLTQTDNPKAEVPKTEAPKTEALKPEAPVP 466
E++ P T TD A P+T+AP +KP A P
Sbjct: 59 EITLPDDTPTDAEYALEPRTDAPSARRVKPSAVWP 93
>SB_32503| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 282
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 362 ELSNPKLTQTDNPKAEVPKTEAPKTEALKPEAPVP 466
E++ P T TD A P+T+AP +KP A P
Sbjct: 199 EITLPDDTPTDAEYALEPRTDAPSARRVKPSAVWP 233
>SB_23813| Best HMM Match : RVT_1 (HMM E-Value=0.00037)
Length = 1283
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 362 ELSNPKLTQTDNPKAEVPKTEAPKTEALKPEAPVP 466
E++ P T TD A P+T+AP +KP A P
Sbjct: 461 EITLPDDTPTDAEYALEPRTDAPSARRVKPSAVWP 495
>SB_8085| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 461
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 362 ELSNPKLTQTDNPKAEVPKTEAPKTEALKPEAPVP 466
E++ P T TD A P+T+AP +KP A P
Sbjct: 126 EITLPDDTPTDAEYALEPRTDAPSARRVKPSAVWP 160
>SB_48606| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 362 ELSNPKLTQTDNPKAEVPKTEAPKTEALKPEAPVP 466
E++ P T TD A P+T+AP +KP A P
Sbjct: 138 EITLPDDTPTDAEYALEPRTDAPSARRVKPSAVWP 172
>SB_44047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 362 ELSNPKLTQTDNPKAEVPKTEAPKTEALKPEAPVP 466
E++ P T TD A P+T+AP +KP A P
Sbjct: 59 EITLPDDTPTDAEYALEPRTDAPSARRVKPSAVWP 93
>SB_43706| Best HMM Match : RVP (HMM E-Value=1.4)
Length = 577
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 362 ELSNPKLTQTDNPKAEVPKTEAPKTEALKPEAPVP 466
E++ P T TD A P+T+AP +KP A P
Sbjct: 460 EITLPDDTPTDAEYALEPRTDAPSARRVKPSAVWP 494
>SB_27011| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 289
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 362 ELSNPKLTQTDNPKAEVPKTEAPKTEALKPEAPVP 466
E++ P T TD A P+T+AP +KP A P
Sbjct: 41 EITLPDDTPTDAEYALEPRTDAPSARRVKPSAVWP 75
>SB_25749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 232
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 362 ELSNPKLTQTDNPKAEVPKTEAPKTEALKPEAPVP 466
E++ P T TD A P+T+AP +KP A P
Sbjct: 83 EITLPDDTPTDAEYALEPRTDAPSARRVKPSAVWP 117
>SB_3491| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 287
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 362 ELSNPKLTQTDNPKAEVPKTEAPKTEALKPEAPVP 466
E++ P T TD A P+T+AP +KP A P
Sbjct: 83 EITLPDDTPTDAEYALEPRTDAPSARRVKPSAVWP 117
>SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)
Length = 761
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 344 ESLAQAELSNPKLTQTDNPKAEVPKTEAPKTEALKPEAP 460
E+L+ SN ++ T++P E TE+P E + EAP
Sbjct: 328 ETLSTVAPSNETIS-TESPSNETISTESPSNEKISTEAP 365
>SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1940
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 338 KQESLAQAELSNPKLTQTDNPKAEVPKTEAPKTEALKPEAPV 463
K+ES +++ L D K E + + +TE ++PE PV
Sbjct: 453 KEESNSKSNRKTKGLVTEDKVKTESAENKIEQTEKVEPERPV 494
>SB_41786| Best HMM Match : AT_hook (HMM E-Value=0.24)
Length = 324
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +2
Query: 338 KQESLAQAELSNPKLTQTDNPKAEVPKTEAPKTEALKPEAPVPEA 472
K+E + + PK Q PK + + P+ K +AP P+A
Sbjct: 77 KKERKPREKKEKPKEKQEKKPKKASSEKKEPEEVTAKDQAPTPQA 121
>SB_4263| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1586
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 362 ELSNPKLTQTDNPKAEVPKTEAPKTEALKPEAPVP 466
E++ P T TD A P T+AP +KP A P
Sbjct: 507 EITLPDDTPTDAEYALEPHTDAPSARRVKPSAVWP 541
>SB_37674| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 27.5 bits (58), Expect = 7.8
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 335 EKQESLAQAELSNPKLTQTDNPK-AEVPKTEAPKTEALKPEAPVPEA 472
E + A E + P+ T P+ A+ P +E K EA KPE PEA
Sbjct: 500 EAPKPSAAKEEAEPEQMDTSEPEPAKEPSSEI-KPEASKPETAKPEA 545
>SB_26305| Best HMM Match : Integrase_Zn (HMM E-Value=9.6)
Length = 222
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 338 KQESLAQAELSNPKLTQTDNPKAEVPKTEAPKTEALKPEAPVPEA 472
+Q+ + QA Q + +A P+ +PKT KP+ V +A
Sbjct: 34 RQDKIRQAARPETSKPQDQDKQAARPRQASPKTNTSKPQDQVNQA 78
>SB_14919| Best HMM Match : MAM (HMM E-Value=0)
Length = 1332
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +2
Query: 380 LTQTDNPKAEVPKTEAPKTEALKPEAPVPEA 472
+T+T NP A P + + P+ P+P A
Sbjct: 721 ITETQNPVAVYPLDAVSREHEISPDTPLPRA 751
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,837,565
Number of Sequences: 59808
Number of extensions: 177058
Number of successful extensions: 530
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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