Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20363
(556 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 38 0.005
At5g09530.1 68418.m01103 hydroxyproline-rich glycoprotein family... 32 0.30
At4g03000.2 68417.m00408 expressed protein contains similarity t... 31 0.52
At4g03000.1 68417.m00407 expressed protein contains similarity t... 31 0.52
At1g09640.1 68414.m01081 elongation factor 1B-gamma, putative / ... 29 1.6
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic... 28 3.6
At1g76930.2 68414.m08956 proline-rich extensin-like family prote... 28 4.8
At5g44610.1 68418.m05466 DREPP plasma membrane polypeptide-relat... 27 6.4
At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 ... 27 8.4
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 37.9 bits (84), Expect = 0.005
Identities = 18/33 (54%), Positives = 22/33 (66%)
Frame = +2
Query: 371 NPKLTQTDNPKAEVPKTEAPKTEALKPEAPVPE 469
+PK T+ PK E PK E+PK EA KPE P P+
Sbjct: 472 SPK-TEQPKPKPESPKQESPKQEAPKPEQPKPK 503
Score = 37.1 bits (82), Expect = 0.008
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = +2
Query: 362 ELSNPKLTQTDNPKAEVPKTEAPKTEALKPEAPVPEA 472
E SNPK + ++PK E PKTE PK KPE+P E+
Sbjct: 456 EPSNPKEPKPESPKQESPKTEQPKP---KPESPKQES 489
Score = 33.1 bits (72), Expect = 0.13
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = +2
Query: 338 KQESLAQAELSNPKLTQTDNPKAEVPKTEAPKTEALKPEAPVPE 469
KQES + E PK ++PK E PK EAPK E KP+ P+
Sbjct: 469 KQES-PKTEQPKPK---PESPKQESPKQEAPKPEQPKPKPESPK 508
Score = 31.5 bits (68), Expect = 0.39
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 362 ELSNPKLTQTDNPKAEVPKTEAPKTEALKPEAPVPEA 472
E S PK ++ P+ PK E P E P+ P PE+
Sbjct: 431 EPSKPKPEESPKPQQPSPKPETPSHEPSNPKEPKPES 467
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +2
Query: 332 TEKQESLAQAELSNPKLTQTDNPKAEVPKTEAPKTEALKPEAPVPE 469
TE+ + ++ + P+ PK E+PK E+ K E P PE
Sbjct: 475 TEQPKPKPESPKQESPKQEAPKPEQPKPKPESPKQESSKQEPPKPE 520
Score = 28.7 bits (61), Expect = 2.8
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +2
Query: 338 KQESLAQAELSNPKLTQTDNPKAEVPKTEAPKTEALKPEAPVP 466
KQE+ E P+ + + P PKTEAPK + E+PVP
Sbjct: 572 KQETPKPEESPKPQPPKQEQP----PKTEAPKMGSPPLESPVP 610
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +2
Query: 368 SNPKLTQTDNPKAEVPKTEAPKTEALKPEAPVPE 469
SNP T PKA PK E +P P PE
Sbjct: 405 SNPSPKPTPTPKAPEPKKEINPPNLEEPSKPKPE 438
Score = 27.9 bits (59), Expect = 4.8
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +2
Query: 332 TEKQESLAQAELSNPKLTQTD-NPKAEVPKTEAPK-TEALKPEAPVPE 469
+ KQE E P+ + + +PK + PK E PK E+ KP+ P E
Sbjct: 511 SSKQEPPKPEESPKPEPPKPEESPKPQPPKQETPKPEESPKPQPPKQE 558
>At5g09530.1 68418.m01103 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 370
Score = 31.9 bits (69), Expect = 0.30
Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +2
Query: 332 TEKQESLAQAELSNPKLTQTDNPKAEVPKTEAPKT-EALKPEAP-VPE 469
TEK E+ E+ P+L + EVPK EAPK E KPE P +PE
Sbjct: 183 TEKPEAPKVPEIPKPELPKLP----EVPKLEAPKVPEIQKPELPKMPE 226
Score = 30.7 bits (66), Expect = 0.68
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = +2
Query: 335 EKQESLAQAELSN-PKLTQTDNPKA-EVPKTEAPKT-EALKPEAP-VPE 469
+K E EL P++ + + PK EVPK EAPK E KPE P +PE
Sbjct: 217 QKPELPKMPELPKMPEIQKPELPKLPEVPKLEAPKVPEIQKPELPKMPE 265
Score = 29.5 bits (63), Expect = 1.6
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Frame = +2
Query: 338 KQESLAQAELSN-PKLTQTDNPKA-EVPKTEAPK-TEALKPEAP-VPE 469
K + + EL P++ + + P EVPK+EAPK E KPE P +PE
Sbjct: 279 KMPEIQKPELPKVPEVPKPELPTVPEVPKSEAPKFPEIPKPELPKIPE 326
>At4g03000.2 68417.m00408 expressed protein contains similarity to
hypothetical proteins
Length = 814
Score = 31.1 bits (67), Expect = 0.52
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 359 AELSNPKLTQTDNPKAEVPKTEAPKTEALK 448
AE + PK + DNPKA V T++ ++E +K
Sbjct: 234 AECNPPKSSDADNPKAPVSNTQSKQSEPVK 263
>At4g03000.1 68417.m00407 expressed protein contains similarity to
hypothetical proteins
Length = 814
Score = 31.1 bits (67), Expect = 0.52
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 359 AELSNPKLTQTDNPKAEVPKTEAPKTEALK 448
AE + PK + DNPKA V T++ ++E +K
Sbjct: 234 AECNPPKSSDADNPKAPVSNTQSKQSEPVK 263
>At1g09640.1 68414.m01081 elongation factor 1B-gamma, putative /
eEF-1B gamma, putative Similar to elongation factor
1-gamma (gb|EF1G_XENLA). ESTs
gb|T20564,gb|T45940,gb|T04527 come from this gene
Length = 414
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +2
Query: 332 TEKQESLAQAELSNPKLTQTDNPKAEVPKTEAPKTEALKPEAPVPEA 472
TE +A + + P + + K E P EAPK A + EAP P+A
Sbjct: 209 TEAVPPIASKKAAQPAKPKEEPKKKEAPVAEAPKL-AEEEEAPKPKA 254
>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
to gi_11935088_gb_AAG41964
Length = 209
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 383 TQTDNPKAEVPKTEAPKTEALKPEAPVPEA 472
T + + E PK+ AP +E+ P PVPE+
Sbjct: 60 TASASSPVESPKSPAPVSESSPPPTPVPES 89
>At1g76930.2 68414.m08956 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 256
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 16 LLIHNNIFDQLNFAIALLLKYTIAHLH 96
LL+ +I L + I LLL+YT HLH
Sbjct: 210 LLLLRSITLPLRYTILLLLQYTTTHLH 236
>At5g44610.1 68418.m05466 DREPP plasma membrane polypeptide-related
contains Pfam profile: PF05558 DREPP plasma membrane
polypeptide
Length = 168
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 398 PKAEVPKTEAPKTEALKPEAPVPE 469
P AE P T+AP+T ++ A PE
Sbjct: 136 PVAETPSTKAPETPVVETPAKAPE 159
>At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 Pfam
PF00400: WD domain, G-beta repeats;
Length = 1327
Score = 27.1 bits (57), Expect = 8.4
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 335 EKQESLAQAELSNPKLTQTDNPKAEVPKTEAPKTEALKPEAPVPE 469
E + LA E + P + P +E P+TE+ A E+P PE
Sbjct: 1153 EVAKPLALEEPTKPLAIEAP-PSSEAPQTESAPETAAAAESPAPE 1196
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,508,622
Number of Sequences: 28952
Number of extensions: 128916
Number of successful extensions: 378
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -