Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20362
(778 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom... 61 2e-10
SPBC887.06c |snx3|grd19|sorting nexin Snx3|Schizosaccharomyces p... 56 4e-09
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 52 7e-08
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces... 52 9e-08
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po... 48 1e-06
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom... 44 2e-05
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 43 6e-05
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 37 0.004
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 36 0.009
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|... 36 0.009
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 28 1.3
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 28 1.3
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi... 28 1.7
SPBC359.06 |mug14||adducin|Schizosaccharomyces pombe|chr 2|||Manual 27 2.3
SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc... 27 3.0
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 4.0
SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac... 26 5.2
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 26 5.2
SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces po... 26 6.9
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 26 6.9
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 26 6.9
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc... 25 9.2
SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces pom... 25 9.2
>SPCPJ732.01 |vps5||retromer complex subunit
Vps5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 61.3 bits (142), Expect = 2e-10
Identities = 32/81 (39%), Positives = 49/81 (60%)
Frame = +3
Query: 12 TIWRRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTDPEFVERRRAGLENFLL 191
T+ RRY +F ++ L +P +IPP+PEK+V+ + D EF+E+RRA LE L
Sbjct: 240 TVQRRYNDFAFLYQLLSNNHPGCIIPPIPEKQVVGRF------DDEFIEQRRAALEVMLR 293
Query: 192 RVASHPRLCFDDQFINFLQEE 254
++++HP L D F FL+ E
Sbjct: 294 KISAHPVLRDDYSFKLFLEAE 314
>SPBC887.06c |snx3|grd19|sorting nexin Snx3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 143
Score = 56.4 bits (130), Expect = 4e-09
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Frame = +3
Query: 12 TIWRRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTDPEFVERRRAGLENFLL 191
++ RRY+EFE+ HD L+ V IPPLP K ++ R D + +E RR GLENFL
Sbjct: 62 SVRRRYSEFEKFHDMLERESGRVSIPPLPGK--IFTQRFRD----DVIEERRQGLENFLR 115
Query: 192 RVASHPRLCFDDQFI-NFLQ 248
VA HP + + + +FLQ
Sbjct: 116 LVAGHPLIQTHSRVLSSFLQ 135
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 52.4 bits (120), Expect = 7e-08
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Frame = +3
Query: 12 TIWRRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRK---SDTTDPEFVERRRAGLEN 182
++WRRY++FE + ++ YP ++PP+P K+ L ++ K +D EF+ R LE
Sbjct: 51 SVWRRYSDFESLVKLMRRQYPAAIVPPIPGKQSLLSYAKHPRKAKSDAEFLNFRSRMLEL 110
Query: 183 FLLRVASHPRLCFDDQFINFL 245
FL + HP + + F F+
Sbjct: 111 FLRQCLLHPCIRSNPIFDKFI 131
>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 52.0 bits (119), Expect = 9e-08
Identities = 26/79 (32%), Positives = 41/79 (51%)
Frame = +3
Query: 12 TIWRRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTDPEFVERRRAGLENFLL 191
++ RRY +FE +H+ L Y IPPLP K + ++ + P F+ RR L+ FL
Sbjct: 40 SVRRRYKDFEMLHNILSHDYNGYAIPPLPRKYTVSSF-SGGSLSPIFIARRMQSLQTFLD 98
Query: 192 RVASHPRLCFDDQFINFLQ 248
R ++HP + FL+
Sbjct: 99 RCSTHPVISNSMHMYQFLE 117
>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 586
Score = 48.4 bits (110), Expect = 1e-06
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Frame = +3
Query: 15 IWRRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTD---PEFVERRRAGLENF 185
I RY+EF + L YP ++PPLP+K + + + T + +E R+ L+ F
Sbjct: 100 IHHRYSEFASLRVQLSRLYPTCLVPPLPDKHKIMDYLINVTKNQRMSRMLEERKRLLQLF 159
Query: 186 LLRVASHPRLCFDDQFINFLQEEM 257
L RVA HP L + F FL +
Sbjct: 160 LRRVAQHPILGLSEVFRKFLSRHV 183
>SPAC6F6.12 |||autophagy associated protein
Atg24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 401
Score = 44.4 bits (100), Expect = 2e-05
Identities = 25/76 (32%), Positives = 37/76 (48%)
Frame = +3
Query: 21 RRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTDPEFVERRRAGLENFLLRVA 200
RR+++F ++ + L V+PPLP K L + K F+ RR L ++ R A
Sbjct: 59 RRFSDFVKLQEILSRMNEDCVVPPLPAKHKL-EYIKGGRFSDNFINRRAKLLNRYITRCA 117
Query: 201 SHPRLCFDDQFINFLQ 248
HP L FI FL+
Sbjct: 118 LHPVLHQSPHFIAFLE 133
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 42.7 bits (96), Expect = 6e-05
Identities = 24/80 (30%), Positives = 39/80 (48%)
Frame = +3
Query: 21 RRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTDPEFVERRRAGLENFLLRVA 200
RRY EF ++H L+ TYP V P+K ++ + K+ +E RR LE +L +
Sbjct: 740 RRYREFAELHKQLKQTYPGVRSLKFPQKSIITSLNKN------VLEYRRGALEEYLQSLF 793
Query: 201 SHPRLCFDDQFINFLQEEMV 260
P +C FL ++ +
Sbjct: 794 RMPEVCDSKMLRMFLSQQNI 813
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 36.7 bits (81), Expect = 0.004
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 21/119 (17%)
Frame = +3
Query: 15 IWRRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAW--------------RKSDTTDPEF 152
I R+Y++F H L +YP+ +P LP K + R SDT DP+
Sbjct: 206 IARKYSDFSHFHHLLLKSYPNAYVPRLPPKDDHDTYLNSSEDSTLSPLPSRSSDTNDPQS 265
Query: 153 -------VERRRAGLENFLLRVASHPRLCFDDQFINFLQEEMVGGKLSPIVDIYYKLKI 308
ER R L ++ + + L ++ ++FL ++ V S + DI ++ ++
Sbjct: 266 DSQHVLRQERMRIELRQYIKNILNDDELHLTEEVLSFLTDDPVTLTASELTDINFRQEL 324
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 35.5 bits (78), Expect = 0.009
Identities = 20/78 (25%), Positives = 42/78 (53%)
Frame = +3
Query: 21 RRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTDPEFVERRRAGLENFLLRVA 200
R + EF++ YL T+P +IP +PE + + E + ++GL+++L V+
Sbjct: 137 RTHAEFKKFAKYLISTHPECLIPAVPEAKT-----SVSSGIKEDLIYLKSGLQSWLNYVS 191
Query: 201 SHPRLCFDDQFINFLQEE 254
++P L +D + F++ +
Sbjct: 192 TNPNLLYDPELQLFVESD 209
>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 664
Score = 35.5 bits (78), Expect = 0.009
Identities = 22/82 (26%), Positives = 36/82 (43%)
Frame = +3
Query: 15 IWRRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTDPEFVERRRAGLENFLLR 194
+ RRY++F +H YL YP +P +P K+ + +F GL +F+
Sbjct: 317 VLRRYSDFFWLHSYLMKKYPFRRVPLIPLKK----FHSKCFNSKQFFRTPPPGLSDFVND 372
Query: 195 VASHPRLCFDDQFINFLQEEMV 260
++ HP D+ F E V
Sbjct: 373 LSHHPIFSNDEVVRVFFTEPNV 394
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 28.3 bits (60), Expect = 1.3
Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Frame = +1
Query: 508 EEMGDGLQKAGHYFDSIADSIDSVAEDEEQLADQLKEYLFYAGALQQLCSNHEALQRNLE 687
E++ D ++ S+ +++++V DE+ L + Y +Q +N EAL + +
Sbjct: 332 EKLQDQIKALLERNQSLQEALETVKNDEKNLREMNANYETEMKEARQKLNNKEALISHYD 391
Query: 688 ---QAQDTLNNRLAERTRAAAG 744
+A++ +RL+E R AG
Sbjct: 392 DDFRAKELKISRLSESLREKAG 413
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 28.3 bits (60), Expect = 1.3
Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 10/95 (10%)
Frame = +1
Query: 496 ERHREEMGDGLQKAGHYF--DSIADSIDSVAEDEEQLADQLKEYLFYAGALQQLCS---- 657
E +E G G +K + + D V EDEE+L D+ E G +++
Sbjct: 124 EEDEDESGGGRRKRARHDRRNQFLDIEAEVDEDEEELEDEEDEIGREDGFIEEEVGADYV 183
Query: 658 ----NHEALQRNLEQAQDTLNNRLAERTRAAAGKS 750
H L R ++ Q RLAE R G+S
Sbjct: 184 GDDRRHRELDRQRQELQSVDAERLAEEYREKYGRS 218
>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
Tea4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +1
Query: 529 QKAGHYFDSIADSIDSVAEDEEQLADQLKEYLFYAGALQQLCSNHE 666
+ G ++ + + + +EDE+ D+ +EY Y L S HE
Sbjct: 70 EDCGTEYNEVVEDDEFRSEDEDDFMDEEEEYALYEAELSSSPSIHE 115
>SPBC359.06 |mug14||adducin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 257
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = +2
Query: 380 GKQLETNLGNFL--YTRSKIIEKNYALCKLHANYGKLFSEWSVIEKRWETDC 529
G +++ N F Y K+ + +C +H+ YGK FS TDC
Sbjct: 84 GSKMKYNTSGFAIHYEMHKVRPEVICVCHVHSIYGKAFSALGKPLDMLNTDC 135
>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 329
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 613 KEYLFYAGALQQLCSNHEALQRNLEQAQD 699
+E F AG++ + CS HEAL L ++D
Sbjct: 133 QEVAFTAGSILRECSRHEALNEVLLNSRD 161
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.6 bits (56), Expect = 4.0
Identities = 16/70 (22%), Positives = 30/70 (42%)
Frame = +1
Query: 499 RHREEMGDGLQKAGHYFDSIADSIDSVAEDEEQLADQLKEYLFYAGALQQLCSNHEALQR 678
RH +E+ Y + + +S+ + + ++D E L+Y +Q C E LQR
Sbjct: 373 RHYDEIEISDMSELKYSNLLNNSMKGF-KGQSSVSDLYSERLYYKQKYEQTCQEVERLQR 431
Query: 679 NLEQAQDTLN 708
+ + N
Sbjct: 432 SYNHVMEEAN 441
>SPBC3H7.15 |hhp1||serine/threonine protein kinase
Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 365
Score = 26.2 bits (55), Expect = 5.2
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +2
Query: 263 RETITDSGYLLQAENKIKSLSVSIRLKKPDPEVESFKNYGKQLETNLGNFLYTRSKII 436
R+T D + Q + ++ + +I P PE SF+NY KQ G + T +I
Sbjct: 296 RKTQQDQQHQQQLQQQLSATPQAIN---PPPERSSFRNYQKQNFDEKGGDINTTVPVI 350
>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 503
Score = 26.2 bits (55), Expect = 5.2
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 371 KNYGKQLETNLGNFLYTRSKII 436
K+YG+ +ET++ F YTR + I
Sbjct: 140 KDYGQTIETDIKRFAYTRHEPI 161
>SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 25.8 bits (54), Expect = 6.9
Identities = 8/26 (30%), Positives = 13/26 (50%)
Frame = +2
Query: 638 LCSSCAAIMRLSNETWNRHKTRSIIG 715
+C S +M E WN H +++G
Sbjct: 92 ICQSYYTVMEAPEEVWNAHYQTNVLG 117
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -1
Query: 658 CCTAAAELPHKTDTLLIGPPAVLRLP 581
CCT PH LL A LRLP
Sbjct: 131 CCTTVHGHPHMPPNLLAASSARLRLP 156
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -1
Query: 616 LLIGPPAVLRLPQPNLYCPLLNRNNVRPSAIRLPSLLD 503
LL ++ ++P L+C LL ++ S+++ LLD
Sbjct: 519 LLFDERSLFKIPYHELFCALLKNPDIISSSVKQSLLLD 556
>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 372
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 508 LDDAPFTKQFAVVRVQFT*GVIFF 437
L+D PFT+ F VV + T G +F
Sbjct: 100 LNDEPFTRTFEVVMSRLTSGPTYF 123
>SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 336
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +1
Query: 514 MGDGLQKAGHYFDSIADSIDSVAEDEEQLADQLKEYLFYAGALQQLC 654
+G+ A DSI D + + ED+E ++L + A L ++C
Sbjct: 264 LGELFNAAKQTSDSIDDIVAQIQEDDENFENELDNFHRSARNLCKIC 310
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,470,138
Number of Sequences: 5004
Number of extensions: 75622
Number of successful extensions: 227
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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