Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20362
(778 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1430 - 37309737-37309946,37310049-37310100,37310348-373104... 63 3e-10
05_03_0608 + 16153992-16154960,16158959-16159168,16159252-161595... 48 6e-06
01_06_1201 - 35380338-35380496,35381200-35381322,35381521-353820... 37 0.016
05_05_0195 + 23142830-23143714,23144288-23144314,23144657-231448... 33 0.25
09_02_0206 - 5783868-5783986,5784422-5784485,5784552-5784620,578... 31 0.77
04_03_0434 + 15889712-15889797,15890086-15890287,15891184-158913... 30 1.8
12_02_0642 + 21454142-21454251,21454683-21454872,21454988-214550... 29 3.1
12_02_0639 + 21443480-21443589,21444022-21444211,21444327-214444... 29 3.1
05_03_0065 - 7953414-7953845,7953963-7954081,7954158-7955990,795... 29 3.1
06_03_0452 + 20931484-20933872,20933950-20934074 29 4.1
03_05_0622 - 26205872-26206080,26206209-26206317 29 4.1
08_02_0225 + 14469037-14469064,14470004-14470215,14470324-144704... 29 5.4
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 29 5.4
11_01_0207 - 1620192-1620280,1620408-1620451,1620703-1620791,162... 28 7.2
08_02_0866 + 22006822-22006899,22006997-22007080,22007621-220077... 28 7.2
02_03_0223 + 16570264-16570357,16570470-16570552,16570974-165710... 28 7.2
02_02_0184 - 7581345-7581769,7581880-7582296,7582891-7583661,758... 28 7.2
01_06_1239 + 35652053-35654050 28 7.2
01_06_0544 + 30118208-30118417,30118959-30119063,30119179-301192... 28 9.5
>01_06_1430 -
37309737-37309946,37310049-37310100,37310348-37310427,
37310538-37310606,37310710-37310843,37311173-37311332,
37311483-37311554,37312113-37312246,37312386-37312521,
37313273-37313416
Length = 396
Score = 62.9 bits (146), Expect = 3e-10
Identities = 34/78 (43%), Positives = 45/78 (57%)
Frame = +3
Query: 21 RRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTDPEFVERRRAGLENFLLRVA 200
RRY++FE +HD L Y + IPPLPEK + +R S EF+E RR L+ F+ R+A
Sbjct: 63 RRYSDFEWLHDRLAEKYKGIFIPPLPEKNAVEKFRFS----KEFIELRRQALDLFVNRIA 118
Query: 201 SHPRLCFDDQFINFLQEE 254
SHP L FLQ +
Sbjct: 119 SHPELKQSGDLKIFLQAD 136
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +2
Query: 338 LKKPDPEVESFKNYGKQLETNLGNFLYTRSKIIEKNYALCKLHANYGK 481
+++ PE E KNY +LE +L ++++++ L + A++GK
Sbjct: 179 VEESSPEYEKLKNYIFELENHLAEAQKQAFRLVKRHRELGQSLADFGK 226
>05_03_0608 +
16153992-16154960,16158959-16159168,16159252-16159512,
16160153-16160197,16160324-16160410,16160679-16160774
Length = 555
Score = 48.4 bits (110), Expect = 6e-06
Identities = 28/83 (33%), Positives = 41/83 (49%)
Frame = +3
Query: 6 RGTIWRRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTDPEFVERRRAGLENF 185
R + RR+ +F + D L + +PP P+K + EFV +RRA LE +
Sbjct: 146 RHAVRRRFRDFVTLADRLAEAFRGHFVPPRPDKNTV---ESQVMQRDEFVAQRRAALERY 202
Query: 186 LLRVASHPRLCFDDQFINFLQEE 254
L R+A HP + D+ FLQ E
Sbjct: 203 LWRLAEHPAIGPSDELRVFLQAE 225
>01_06_1201 -
35380338-35380496,35381200-35381322,35381521-35382066,
35382285-35382392,35382695-35383225,35383614-35383743,
35384225-35385081,35385303-35385408,35387119-35387230,
35389255-35389347,35389723-35389771,35389859-35389897,
35390671-35390757,35391613-35391873,35391957-35392166,
35392413-35393507
Length = 1501
Score = 37.1 bits (82), Expect = 0.016
Identities = 22/77 (28%), Positives = 38/77 (49%)
Frame = +3
Query: 21 RRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTDPEFVERRRAGLENFLLRVA 200
RR+ + + D L Y + +P P+K ++ EFV +R A L+ +L R+A
Sbjct: 201 RRFRDVVALADRLAAAYRGLFVPARPDKSIVEG---QVMQRHEFVNQRCAALQRYLGRLA 257
Query: 201 SHPRLCFDDQFINFLQE 251
+HP + + +FL E
Sbjct: 258 AHPTIGRSAELHDFLTE 274
>05_05_0195 +
23142830-23143714,23144288-23144314,23144657-23144866,
23144976-23145242,23146290-23146376,23146495-23146553,
23147166-23147768,23148063-23148192,23148570-23149100,
23149636-23149743,23149911-23150456,23150957-23151079,
23151494-23151709
Length = 1263
Score = 33.1 bits (72), Expect = 0.25
Identities = 21/77 (27%), Positives = 36/77 (46%)
Frame = +3
Query: 21 RRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTDPEFVERRRAGLENFLLRVA 200
RR+ + + D L + + IP P+K V+ +FV +R + L+ +L R+A
Sbjct: 137 RRFRDVVALADRLAAAHRGLFIPARPDKSVVEG---QVMQRHDFVNQRCSALQRYLRRLA 193
Query: 201 SHPRLCFDDQFINFLQE 251
+HP + FL E
Sbjct: 194 AHPVVGHSPDLRTFLTE 210
>09_02_0206 -
5783868-5783986,5784422-5784485,5784552-5784620,
5784698-5784940,5786844-5786912,5786988-5787212,
5787289-5787532,5787607-5787716,5787948-5788016,
5788988-5789042,5789063-5789097,5789422-5789514,
5789545-5789595
Length = 481
Score = 31.5 bits (68), Expect = 0.77
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 239 FPTRRNGWRETITDSGYLLQAENKIKSLSVSIRLKKPDP-EVESFKNYGKQLETNL 403
FP +NG + +D +L E+ IK + + PDP EVE K K+ E +L
Sbjct: 372 FPPSQNGVGKRSSDDIDILHTESLIKEVERVFSINNPDPLEVEKAKKVLKEQEQSL 427
>04_03_0434 +
15889712-15889797,15890086-15890287,15891184-15891323,
15891420-15891559,15891762-15891913,15892773-15892902,
15892990-15893141
Length = 333
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +1
Query: 541 HYFDSIADSIDSVAEDEEQLA--DQLKEYLFYAGALQQLCSNHEALQRNLEQAQDTLNNR 714
HY D DS D ++DEE + D++ ++F+ +Q + ++ A ++L Q D
Sbjct: 247 HYDDDDDDSDDDFSDDEELQSPIDEVDPFIFFVDTIQGMQASDPARFQSLMQTLDFRYQA 306
Query: 715 LA 720
LA
Sbjct: 307 LA 308
>12_02_0642 +
21454142-21454251,21454683-21454872,21454988-21455069,
21455224-21455802,21455854-21456909,21457133-21457251,
21457369-21457812
Length = 859
Score = 29.5 bits (63), Expect = 3.1
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Frame = +2
Query: 284 GYLLQAENKIKSLSVSIRL--KKPDPEVESFK---NYGKQLETNLGNFLYTRSKIIEKNY 448
GYL QA+ K S + K D V F+ N +++++++ + + ++E
Sbjct: 554 GYLKQAKGKKASKVIRSETFWKNVDIAVNYFEPLANVLRRMDSDVPSMGFFHGLMLEAKK 613
Query: 449 ALCKLHANYGKLFSE-WSVIEKRWETDCRRP 538
+ + N F E W +I+KRW+ + P
Sbjct: 614 EISQRFDNDKSRFIEVWDIIDKRWDNKLKTP 644
>12_02_0639 +
21443480-21443589,21444022-21444211,21444327-21444408,
21444563-21445054,21445221-21446246,21446470-21446588,
21446706-21447149
Length = 820
Score = 29.5 bits (63), Expect = 3.1
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Frame = +2
Query: 284 GYLLQAENKIKSLSVSIRL--KKPDPEVESFK---NYGKQLETNLGNFLYTRSKIIEKNY 448
GYL QA+ K S + K D V F+ N +++++++ + + ++E
Sbjct: 515 GYLKQAKGKKASKVIRSETFWKNVDIAVNYFEPLANVLRRMDSDVPSMGFFHGLMLEAKK 574
Query: 449 ALCKLHANYGKLFSE-WSVIEKRWETDCRRP 538
+ + N F E W +I+KRW+ + P
Sbjct: 575 EISQRFDNDKSRFIEVWDIIDKRWDNKLKTP 605
>05_03_0065 -
7953414-7953845,7953963-7954081,7954158-7955990,
7957103-7957559
Length = 946
Score = 29.5 bits (63), Expect = 3.1
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Frame = +2
Query: 284 GYLLQAENKIKSLSVSIRL--KKPDPEVESFK---NYGKQLETNLGNFLYTRSKIIEKNY 448
GYL QA+ K S + K D V F+ N +++++++ + + ++E
Sbjct: 596 GYLKQAKGKKASKVIRSETFWKNVDIAVNYFEPLANVLRRMDSDVPSMGFFHGLMLEAKK 655
Query: 449 ALCKLHANYGKLFSE-WSVIEKRWETDCRRP 538
+ + N F E W +I+KRW+ + P
Sbjct: 656 EISQRFDNDKSRFIEVWDIIDKRWDNKIKAP 686
>06_03_0452 + 20931484-20933872,20933950-20934074
Length = 837
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 507 SMTLHSLNSLP*FACSLHRA*FFSIILDLVYKKFPKLVSNC 385
S+T H LN+LP CSL + + + + FP + NC
Sbjct: 86 SLTGHGLNNLPAAICSLTKLSHIDLSRNSISGSFPTALYNC 126
>03_05_0622 - 26205872-26206080,26206209-26206317
Length = 105
Score = 29.1 bits (62), Expect = 4.1
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +2
Query: 455 CKLHANYGKLFSEWSVIEKRWETDCRRPD 541
C + N+G F+ W + + W +C R D
Sbjct: 76 CLSYLNFGTAFANWGSVVRFWRLNCGRRD 104
>08_02_0225 +
14469037-14469064,14470004-14470215,14470324-14470433,
14470498-14470765,14470878-14471087,14471162-14471230,
14473346-14473591,14473672-14473740,14473808-14473871,
14474468-14474583
Length = 463
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 239 FPTRRNGWRETITDSGYLLQAENKIKSLSVSIRLKKPDP-EVESFKNYGKQLETNL 403
FP +NG + +D +L E+ IK + PDP E+E K K+ E +L
Sbjct: 355 FPPSQNGVGKKSSDCIEILHTESLIKEVERVFSASNPDPLEMEKAKKVLKEHEQSL 410
>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +1
Query: 508 EEMGDGLQKAGHYFDSIADSIDSVAEDEEQLADQLKEYLFYAGALQQLCSNHEA 669
E+ GDGLQ G D + D + +E+Q+ F GAL+ N A
Sbjct: 3477 EDDGDGLQSEGTAVDVVDSKKDDMEVEEKQIDISRGSSSFLPGALESAELNQPA 3530
>11_01_0207 -
1620192-1620280,1620408-1620451,1620703-1620791,
1620870-1620914,1621441-1621548,1621638-1621723,
1622202-1622289,1622403-1622576,1623084-1623159,
1623256-1623305,1623392-1623454,1623689-1623791,
1623871-1623973,1624679-1624739,1624864-1624904,
1625076-1625154
Length = 432
Score = 28.3 bits (60), Expect = 7.2
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Frame = +2
Query: 341 KKPDPEVESFKNYGKQLE--TNLGNFLYTRSKIIEKNYALC--KLHAN-YGKLFSEWSVI 505
K + E+E N LE ++ LY +I A C LH Y ++FS W+V
Sbjct: 199 KDTEGEIEMIDNSRSTLEEDSHKQKSLYKNWPLISSIIAYCVFTLHDTAYSEIFSLWAVS 258
Query: 506 EKRW 517
EKR+
Sbjct: 259 EKRY 262
>08_02_0866 +
22006822-22006899,22006997-22007080,22007621-22007719,
22007864-22007908,22008170-22008265,22009150-22009227,
22009864-22009949,22010038-22010104,22010192-22010254,
22010332-22010433,22010559-22010663,22010748-22010840,
22011380-22011468,22012049-22012268,22012816-22012899,
22013221-22013337,22013399-22013473,22013589-22013675,
22013766-22013828,22014833-22014949,22015231-22015323,
22015794-22015919,22015992-22016092,22016917-22016996,
22017023-22017093,22017200-22017256,22017430-22017573
Length = 839
Score = 28.3 bits (60), Expect = 7.2
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Frame = +1
Query: 529 QKAGHYFDSIADSIDSVAEDEEQLA----DQLKEYLFYAGALQQLCSNHEALQRNLEQAQ 696
Q H+F + A + S+A + L D L+ L Y G++ LC + L+
Sbjct: 339 QLFAHFFPASASDVSSIAPLMDPLCTYLYDTLRPRLIYEGSIDSLCELVDILK------V 392
Query: 697 DTLNNRLAERTRAAAGKSGIMSDCL 771
+ L +L+ R + AG I+ L
Sbjct: 393 EVLGEQLSRRGESVAGLRPILQRIL 417
>02_03_0223 +
16570264-16570357,16570470-16570552,16570974-16571032,
16571607-16571665,16572276-16572325,16573575-16573612,
16574619-16574695,16575593-16576503
Length = 456
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 504 SRRDGRRIAEGRTLFRFNSGQYRFGCGRRRTAGG 605
+RR RR + G ++ + + Q+R G RRR+ GG
Sbjct: 388 ARRRRRRSSGGGSVRKRSGAQWRSGSARRRSGGG 421
>02_02_0184 -
7581345-7581769,7581880-7582296,7582891-7583661,
7583894-7584437,7584794-7584961,7585019-7585101,
7585190-7585631
Length = 949
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 317 SLSVSIRLKKPDPEVESFKNYGKQLET-NLGNFLYTRSKIIEKNYALCKLHANYG 478
S+SV+ RL K + F+ Y + ++ N GNFL ++E ++AL K YG
Sbjct: 248 SISVARRLLK---QGLPFRGYDESKDSYNKGNFLEFHDMLLEHDHALGKAVGKYG 299
>01_06_1239 + 35652053-35654050
Length = 665
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -3
Query: 758 IIPDFPAAALVRSANRLLSVSCACSRFRWRAS*LLHSCCRAPA*NRYSFN 609
+ PD PA+AL+ N LL +C R + LL R A + +S++
Sbjct: 118 LAPDLPASALLIPYNLLLRSACRAGMLRLASGLLLEMRDRGVAPDAFSYS 167
>01_06_0544 +
30118208-30118417,30118959-30119063,30119179-30119260,
30119415-30121250,30121327-30121445,30121563-30122006
Length = 931
Score = 27.9 bits (59), Expect = 9.5
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Frame = +2
Query: 284 GYLLQAENKIKSLSVSIRL--KKPDPEVESFK---NYGKQLETNLGNFLYTRSKIIEKNY 448
GYL Q + K S + K D V F+ N +++++++ + + ++E
Sbjct: 576 GYLKQTKGKKASKVIRSETFWKNVDIAVNYFEPLANVLRRMDSDVPSMGFFHGLMLEAKK 635
Query: 449 ALCKLHANYGKLFSE-WSVIEKRWETDCRRP 538
+ + N F E W +I+KRW+ + P
Sbjct: 636 EISQRFDNDKSRFIEVWDIIDKRWDNKLKTP 666
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,157,082
Number of Sequences: 37544
Number of extensions: 518803
Number of successful extensions: 1346
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1342
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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