Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20362
         (778 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   3.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   5.5  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   7.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   7.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   7.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   9.7  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +3

Query: 225 DQFINFLQEEMVGGKLSPIVDIYYKLKIK 311
           D FI  ++ + VG K++   ++ YK+ ++
Sbjct: 185 DSFIELIRRQRVGYKVTGFEELAYKMGLE 213


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 147 EFVERRRAGLENFLLRVASHPRLCFDDQFINFLQEEMVGGK 269
           EF   R   LE+F  +V  +P     ++F+N+L+    GGK
Sbjct: 290 EFERNRLQLLESFKRKVNFYPNNQDIEKFLNYLKR---GGK 327


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 134 HYRPGVCGAPSSWLRKFPITSR 199
           H +P       SWL KFP  S+
Sbjct: 392 HMQPRKKNCCRSWLSKFPTRSK 413


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 134 HYRPGVCGAPSSWLRKFPITSR 199
           H +P       SWL KFP  S+
Sbjct: 392 HMQPRKKNCCRSWLSKFPTRSK 413


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +3

Query: 39  EQIHDYLQVTYPHVVIP 89
           + +H+YL+ +YP +  P
Sbjct: 101 DNLHEYLKFSYPRMRAP 117


>AF388659-1|AAK71995.1|  782|Apis mellifera
          1D-myo-inositol-trisphosphate 3-kinaseisoform A
          protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -2

Query: 54 NHVFVRIQCISSR 16
          N V +R QCISSR
Sbjct: 43 NRVLLRGQCISSR 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,233
Number of Sequences: 438
Number of extensions: 5563
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)