Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20361
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom...    61   1e-10
SPBC887.06c |snx3|grd19|sorting nexin Snx3|Schizosaccharomyces p...    56   3e-09
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    52   5e-08
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces...    52   7e-08
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po...    48   8e-07
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    44   1e-05
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    43   4e-05
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    37   0.003
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    36   0.006
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    36   0.006
SPBC359.06 |mug14||adducin|Schizosaccharomyces pombe|chr 2|||Manual    27   1.6  
SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac...    26   3.7  
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...    26   3.7  
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc...    25   6.5  

>SPCPJ732.01 |vps5||retromer complex subunit
           Vps5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 61.3 bits (142), Expect = 1e-10
 Identities = 32/81 (39%), Positives = 49/81 (60%)
 Frame = +3

Query: 12  TIWRRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTDPEFVERRRAGLENFLL 191
           T+ RRY +F  ++  L   +P  +IPP+PEK+V+  +      D EF+E+RRA LE  L 
Sbjct: 240 TVQRRYNDFAFLYQLLSNNHPGCIIPPIPEKQVVGRF------DDEFIEQRRAALEVMLR 293

Query: 192 RVASHPRLCFDDQFINFLQEE 254
           ++++HP L  D  F  FL+ E
Sbjct: 294 KISAHPVLRDDYSFKLFLEAE 314


>SPBC887.06c |snx3|grd19|sorting nexin Snx3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 56.4 bits (130), Expect = 3e-09
 Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
 Frame = +3

Query: 12  TIWRRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTDPEFVERRRAGLENFLL 191
           ++ RRY+EFE+ HD L+     V IPPLP K  ++  R  D    + +E RR GLENFL 
Sbjct: 62  SVRRRYSEFEKFHDMLERESGRVSIPPLPGK--IFTQRFRD----DVIEERRQGLENFLR 115

Query: 192 RVASHPRLCFDDQFI-NFLQ 248
            VA HP +    + + +FLQ
Sbjct: 116 LVAGHPLIQTHSRVLSSFLQ 135


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 52.4 bits (120), Expect = 5e-08
 Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
 Frame = +3

Query: 12  TIWRRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRK---SDTTDPEFVERRRAGLEN 182
           ++WRRY++FE +   ++  YP  ++PP+P K+ L ++ K      +D EF+  R   LE 
Sbjct: 51  SVWRRYSDFESLVKLMRRQYPAAIVPPIPGKQSLLSYAKHPRKAKSDAEFLNFRSRMLEL 110

Query: 183 FLLRVASHPRLCFDDQFINFL 245
           FL +   HP +  +  F  F+
Sbjct: 111 FLRQCLLHPCIRSNPIFDKFI 131


>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 52.0 bits (119), Expect = 7e-08
 Identities = 26/79 (32%), Positives = 41/79 (51%)
 Frame = +3

Query: 12  TIWRRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTDPEFVERRRAGLENFLL 191
           ++ RRY +FE +H+ L   Y    IPPLP K  + ++    +  P F+ RR   L+ FL 
Sbjct: 40  SVRRRYKDFEMLHNILSHDYNGYAIPPLPRKYTVSSF-SGGSLSPIFIARRMQSLQTFLD 98

Query: 192 RVASHPRLCFDDQFINFLQ 248
           R ++HP +        FL+
Sbjct: 99  RCSTHPVISNSMHMYQFLE 117


>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 586

 Score = 48.4 bits (110), Expect = 8e-07
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
 Frame = +3

Query: 15  IWRRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTD---PEFVERRRAGLENF 185
           I  RY+EF  +   L   YP  ++PPLP+K  +  +  + T +      +E R+  L+ F
Sbjct: 100 IHHRYSEFASLRVQLSRLYPTCLVPPLPDKHKIMDYLINVTKNQRMSRMLEERKRLLQLF 159

Query: 186 LLRVASHPRLCFDDQFINFLQEEM 257
           L RVA HP L   + F  FL   +
Sbjct: 160 LRRVAQHPILGLSEVFRKFLSRHV 183


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 25/76 (32%), Positives = 37/76 (48%)
 Frame = +3

Query: 21  RRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTDPEFVERRRAGLENFLLRVA 200
           RR+++F ++ + L       V+PPLP K  L  + K       F+ RR   L  ++ R A
Sbjct: 59  RRFSDFVKLQEILSRMNEDCVVPPLPAKHKL-EYIKGGRFSDNFINRRAKLLNRYITRCA 117

Query: 201 SHPRLCFDDQFINFLQ 248
            HP L     FI FL+
Sbjct: 118 LHPVLHQSPHFIAFLE 133


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 42.7 bits (96), Expect = 4e-05
 Identities = 24/80 (30%), Positives = 39/80 (48%)
 Frame = +3

Query: 21  RRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTDPEFVERRRAGLENFLLRVA 200
           RRY EF ++H  L+ TYP V     P+K ++ +  K+       +E RR  LE +L  + 
Sbjct: 740 RRYREFAELHKQLKQTYPGVRSLKFPQKSIITSLNKN------VLEYRRGALEEYLQSLF 793

Query: 201 SHPRLCFDDQFINFLQEEMV 260
             P +C       FL ++ +
Sbjct: 794 RMPEVCDSKMLRMFLSQQNI 813


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 21/119 (17%)
 Frame = +3

Query: 15  IWRRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAW--------------RKSDTTDPEF 152
           I R+Y++F   H  L  +YP+  +P LP K     +              R SDT DP+ 
Sbjct: 206 IARKYSDFSHFHHLLLKSYPNAYVPRLPPKDDHDTYLNSSEDSTLSPLPSRSSDTNDPQS 265

Query: 153 -------VERRRAGLENFLLRVASHPRLCFDDQFINFLQEEMVGGKLSPIVDIYYKLKI 308
                   ER R  L  ++  + +   L   ++ ++FL ++ V    S + DI ++ ++
Sbjct: 266 DSQHVLRQERMRIELRQYIKNILNDDELHLTEEVLSFLTDDPVTLTASELTDINFRQEL 324


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 35.5 bits (78), Expect = 0.006
 Identities = 20/78 (25%), Positives = 42/78 (53%)
 Frame = +3

Query: 21  RRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTDPEFVERRRAGLENFLLRVA 200
           R + EF++   YL  T+P  +IP +PE +         +   E +   ++GL+++L  V+
Sbjct: 137 RTHAEFKKFAKYLISTHPECLIPAVPEAKT-----SVSSGIKEDLIYLKSGLQSWLNYVS 191

Query: 201 SHPRLCFDDQFINFLQEE 254
           ++P L +D +   F++ +
Sbjct: 192 TNPNLLYDPELQLFVESD 209


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 35.5 bits (78), Expect = 0.006
 Identities = 22/82 (26%), Positives = 36/82 (43%)
 Frame = +3

Query: 15  IWRRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTDPEFVERRRAGLENFLLR 194
           + RRY++F  +H YL   YP   +P +P K+    +        +F      GL +F+  
Sbjct: 317 VLRRYSDFFWLHSYLMKKYPFRRVPLIPLKK----FHSKCFNSKQFFRTPPPGLSDFVND 372

Query: 195 VASHPRLCFDDQFINFLQEEMV 260
           ++ HP    D+    F  E  V
Sbjct: 373 LSHHPIFSNDEVVRVFFTEPNV 394


>SPBC359.06 |mug14||adducin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 257

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +2

Query: 380 GKQLETNLGNFL--YTRSKIIEKNYALCKLHANYGKLFSEWSVIEKRWETDC 529
           G +++ N   F   Y   K+  +   +C +H+ YGK FS          TDC
Sbjct: 84  GSKMKYNTSGFAIHYEMHKVRPEVICVCHVHSIYGKAFSALGKPLDMLNTDC 135


>SPBC3H7.15 |hhp1||serine/threonine protein kinase
           Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +2

Query: 263 RETITDSGYLLQAENKIKSLSVSIRLKKPDPEVESFKNYGKQLETNLGNFLYTRSKII 436
           R+T  D  +  Q + ++ +   +I    P PE  SF+NY KQ     G  + T   +I
Sbjct: 296 RKTQQDQQHQQQLQQQLSATPQAIN---PPPERSSFRNYQKQNFDEKGGDINTTVPVI 350


>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 371 KNYGKQLETNLGNFLYTRSKII 436
           K+YG+ +ET++  F YTR + I
Sbjct: 140 KDYGQTIETDIKRFAYTRHEPI 161


>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 508 LDDAPFTKQFAVVRVQFT*GVIFF 437
           L+D PFT+ F VV  + T G  +F
Sbjct: 100 LNDEPFTRTFEVVMSRLTSGPTYF 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,740,141
Number of Sequences: 5004
Number of extensions: 59527
Number of successful extensions: 170
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)