Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20361
         (613 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45198| Best HMM Match : PX (HMM E-Value=2.3e-10)                    74   1e-13
SB_22287| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   1e-05
SB_41682| Best HMM Match : PX (HMM E-Value=3.9)                        44   1e-04
SB_31091| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   4e-04
SB_1933| Best HMM Match : PI3_PI4_kinase (HMM E-Value=4.06377e-44)     39   0.004
SB_21029| Best HMM Match : PX (HMM E-Value=9.1e-15)                    38   0.006
SB_38344| Best HMM Match : PX (HMM E-Value=8.1e-21)                    37   0.011
SB_18498| Best HMM Match : PX (HMM E-Value=1.6e-15)                    37   0.015
SB_45017| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.10 
SB_43841| Best HMM Match : PXA (HMM E-Value=1e-16)                     33   0.24 
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)                        29   2.2  
SB_47087| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_9811| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.9  
SB_8185| Best HMM Match : Rho_N (HMM E-Value=0.0007)                   27   9.1  
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)                  27   9.1  

>SB_45198| Best HMM Match : PX (HMM E-Value=2.3e-10)
          Length = 408

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 33/57 (57%), Positives = 44/57 (77%), Gaps = 2/57 (3%)
 Frame = +3

Query: 15  IWRRYTEFEQIHDYLQVTYPHVVIPPLPEKRV-LYAWR-KSDTTDPEFVERRRAGLE 179
           +WRRY+EFE + +YL  TYP V++PPLPEKR+ L A R  +D  DP+F+E+RR GLE
Sbjct: 69  LWRRYSEFELLRNYLVATYPAVIVPPLPEKRINLSALRLAADKFDPDFIEKRRTGLE 125



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
 Frame = +2

Query: 293 LQAENKIKSLSVSIRLKKPDPEVESFKNYGKQLETNLGNFLYTRSK---IIEKNY 448
           L+ +++++SLS S+ LKKPD   E  K+Y   L T++ + L  R +    I+ NY
Sbjct: 124 LEVDSRLRSLSASMSLKKPDRRFEDMKHYADNLGTSVASMLKVRQQEKASIKSNY 178


>SB_22287| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 26/64 (40%), Positives = 38/64 (59%)
 Frame = +3

Query: 12  TIWRRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTDPEFVERRRAGLENFLL 191
           T+ RRY+EF  +   L   +P+  IPPLP KRVL  +      D EF++ R+ GLE++L 
Sbjct: 68  TVRRRYSEFTWLRKKLAEEFPNASIPPLPGKRVLGRF------DTEFIKNRQQGLEHWLR 121

Query: 192 RVAS 203
            + S
Sbjct: 122 SLLS 125


>SB_41682| Best HMM Match : PX (HMM E-Value=3.9)
          Length = 96

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
 Frame = +3

Query: 78  VVIPPLPEKRV--LYAWRKSDTT-DPEFVERRRAGLENFLLRVASHPRLCFDDQFINFLQ 248
           +V+P LP K +  +  +R  D   + EF+E RR GLE F+ RVA HP    +     FLQ
Sbjct: 1   IVVPALPGKALKRMLPFRGDDGIFEDEFIEDRRQGLEAFINRVAGHPLAQNEKCLHMFLQ 60

Query: 249 EEMVGGKLSP 278
           E M+     P
Sbjct: 61  EPMIDKNYVP 70


>SB_31091| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 607

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 22/65 (33%), Positives = 37/65 (56%)
 Frame = +3

Query: 21  RRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTDPEFVERRRAGLENFLLRVA 200
           RR+  F+ +++ L   Y  + IPPLP+K++      +     +FVE+RR  LE ++ R+ 
Sbjct: 199 RRFKHFDWLYNRLVDKYTLIAIPPLPDKQI------TGRFGEDFVEKRREKLEKWVGRLC 252

Query: 201 SHPRL 215
            HP L
Sbjct: 253 QHPVL 257


>SB_1933| Best HMM Match : PI3_PI4_kinase (HMM E-Value=4.06377e-44)
          Length = 915

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 22/66 (33%), Positives = 34/66 (51%)
 Frame = +3

Query: 15  IWRRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTDPEFVERRRAGLENFLLR 194
           ++RR+  F ++H  L   YP + +P LP +  +Y  R    T     ERRRA L+ FL  
Sbjct: 502 VFRRFGHFIELHAKLSELYPDIALPRLPAR--IYLGRSQIRT---VAERRRAELDTFLRH 556

Query: 195 VASHPR 212
           +   P+
Sbjct: 557 LLMMPQ 562


>SB_21029| Best HMM Match : PX (HMM E-Value=9.1e-15)
          Length = 1466

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 25/76 (32%), Positives = 37/76 (48%)
 Frame = +3

Query: 21  RRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTDPEFVERRRAGLENFLLRVA 200
           +RY EF ++HD L   Y H+    LP K+           DP+++E RR  LE +L ++ 
Sbjct: 784 KRYREFRELHDKLVKEY-HIDQSLLPPKKYF------GNLDPDYIETRRLLLEIYLHKLL 836

Query: 201 SHPRLCFDDQFINFLQ 248
                   DQ  NFL+
Sbjct: 837 EKFEDNLPDQLDNFLE 852


>SB_38344| Best HMM Match : PX (HMM E-Value=8.1e-21)
          Length = 632

 Score = 37.1 bits (82), Expect = 0.011
 Identities = 21/64 (32%), Positives = 38/64 (59%)
 Frame = +3

Query: 12  TIWRRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTDPEFVERRRAGLENFLL 191
           TI+RRY++F+ +H +L+  +      PLP   +L   R     D +F+E+RRA L++++ 
Sbjct: 371 TIYRRYSDFDDLHMHLKNKFG-----PLPNL-LLPGKRTFRNMDKDFLEKRRAALDSYIQ 424

Query: 192 RVAS 203
            + S
Sbjct: 425 TLLS 428


>SB_18498| Best HMM Match : PX (HMM E-Value=1.6e-15)
          Length = 402

 Score = 36.7 bits (81), Expect = 0.015
 Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
 Frame = +3

Query: 3   ARGTIWRRYTEFEQIHDYLQVTYP-HVVIPPLPEKRVLYAWRKSDTTDPEFVERRRAGLE 179
           ++  + RR++EFE + + L+      +  PPLP KR+L  + +S      F++ R+  L+
Sbjct: 45  SKSCVRRRFSEFEWLRNILEQNGSISLQPPPLPHKRLLGRFNQS------FIKERQQELQ 98

Query: 180 NFLLRVASHPRLCFDDQFINFLQEEMVGGKLSPIVD 287
           +FL+RV +      +     FLQ  +    +  I+D
Sbjct: 99  DFLVRVLAVTSYLSEAALHLFLQTNLSINTIERILD 134


>SB_45017| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
 Frame = +3

Query: 12  TIWRRYTEFEQIHDYLQVTYPHV--VIPPLPEKRVL 113
           T+ RR+++F  +H+ +   Y H+  ++PP PEK V+
Sbjct: 10  TVKRRFSDFLGLHERINAKYLHLGRIVPPAPEKSVI 45


>SB_43841| Best HMM Match : PXA (HMM E-Value=1e-16)
          Length = 848

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = +3

Query: 15  IWRRYTEFEQIHDYLQVTYPHVVIP-PLPEKRVLYAWRKSDTTDPEFVERRRAGLENFLL 191
           + R++ +F+ +H  L+     +    P P K+    W KS   D EF+ + R  LE +L 
Sbjct: 649 VTRKFNDFKILHAKLKECSSKLPNELPAPAKK----WYKS--LDDEFLNKSRLALEQYLQ 702

Query: 192 RVASHPRLCFDDQFINFL 245
            + +   LC  ++  +FL
Sbjct: 703 SLLADETLCLSEELYSFL 720


>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 2681

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 459  NCTRTTANCLVNGASSRRDGRRIAEGRTLFRFNSGQY 569
            +CT T   C+    +S RDG+ I  G      ++GQY
Sbjct: 2605 DCTATCNRCIPTANNSTRDGKSIPSGLLWRSTDAGQY 2641


>SB_47087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 332

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +1

Query: 367 LQKLWETIRN*FRKLFIYKIQNNRKK 444
           L+K WET+ N FRKL +   QNN  K
Sbjct: 206 LEKWWETVENVFRKL-LATFQNNPDK 230


>SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3212

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
 Frame = +2

Query: 263  RETITDSGYLLQAENK---IKSLSVSIRLKKPDPEVESFKNYGKQLETNLGNFL-YTRSK 430
            +E +T    LL+   K   I S + SI  K P   VE   +  K +E +LGNFL Y + +
Sbjct: 2010 KEELTRVEALLETYRKSSSITSSTPSILQKSPGITVEEDMSQVKHMEEDLGNFLFYVQEE 2069

Query: 431  I--IEKN 445
            +  IE+N
Sbjct: 2070 LAKIERN 2076


>SB_9811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -3

Query: 182 IF*ASSTALHKLRVCSVRFAPRVKHPFLW*WRYNYMWICDL*VIM 48
           IF  +S A+H+ +V    F P +KH +++ W    +WI  + +++
Sbjct: 117 IFTLTSMAIHRRKVILNPFKPEIKHRYVFIW-IVVIWIMAILIVI 160


>SB_8185| Best HMM Match : Rho_N (HMM E-Value=0.0007)
          Length = 1133

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 493  MERHREEMGDGLQKAGHYFDSIADSI-DSVAEDE-EQLADQ 609
            +E+H++ MGD  +K   Y D +A+   D V  DE ++  DQ
Sbjct: 1054 LEKHQQAMGDWQKKRQEYQDWLAEQYNDKVRADENDEETDQ 1094


>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
          Length = 1313

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 214  SRG*DATRNRKFSKPARRRSTNSGS 140
            +RG   TR  K  KPARR+S++S S
Sbjct: 992  TRGRSPTRKDKKDKPARRQSSSSSS 1016


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,283,472
Number of Sequences: 59808
Number of extensions: 433974
Number of successful extensions: 1014
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)