Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20361
         (613 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034364-3|CAA22253.1|  162|Caenorhabditis elegans Hypothetical ...    44   7e-05
AL023835-4|CAD56254.1|  564|Caenorhabditis elegans Hypothetical ...    44   1e-04
AL023835-3|CAD56253.1|  566|Caenorhabditis elegans Hypothetical ...    44   1e-04
AL023835-2|CAA19487.2|  592|Caenorhabditis elegans Hypothetical ...    44   1e-04
Z79754-2|CAB02091.1|  578|Caenorhabditis elegans Hypothetical pr...    30   1.5  

>AL034364-3|CAA22253.1|  162|Caenorhabditis elegans Hypothetical
           protein W06D4.5 protein.
          Length = 162

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
 Frame = +3

Query: 12  TIWRRYTEFEQIHDYLQVTYPHVVIPPLPEK--RVLYAWRKSDTT-DPEFVERRRAGLEN 182
           ++ RRY++FE +   L+     +V+P LP K  +    +R  D   + EF+E RR  LE 
Sbjct: 66  SVRRRYSDFEWVRAELERD-SKIVVPTLPGKSFKRQLPFRSDDGIFEEEFIENRRKALEL 124

Query: 183 FLLRVASHPRLCFDDQFINFLQEEMVGGKLSP 278
           F+ +VA HP    +     FLQE  +     P
Sbjct: 125 FINKVAGHPLAQNERSLHIFLQEPTIDKNYVP 156


>AL023835-4|CAD56254.1|  564|Caenorhabditis elegans Hypothetical
           protein Y37A1B.2d protein.
          Length = 564

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 21/75 (28%), Positives = 42/75 (56%)
 Frame = +3

Query: 21  RRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTDPEFVERRRAGLENFLLRVA 200
           RRY  F+ +H+ L   Y  + IPPLPEK+V      +   + + ++ R+  L+ ++ ++ 
Sbjct: 262 RRYKHFDWLHEQLSAKYVLIPIPPLPEKQV------AGRYEEDLIDHRKHILQLWVNKIC 315

Query: 201 SHPRLCFDDQFINFL 245
            HP L   + +++F+
Sbjct: 316 RHPVLSQSEVWLHFI 330


>AL023835-3|CAD56253.1|  566|Caenorhabditis elegans Hypothetical
           protein Y37A1B.2c protein.
          Length = 566

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 21/75 (28%), Positives = 42/75 (56%)
 Frame = +3

Query: 21  RRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTDPEFVERRRAGLENFLLRVA 200
           RRY  F+ +H+ L   Y  + IPPLPEK+V      +   + + ++ R+  L+ ++ ++ 
Sbjct: 264 RRYKHFDWLHEQLSAKYVLIPIPPLPEKQV------AGRYEEDLIDHRKHILQLWVNKIC 317

Query: 201 SHPRLCFDDQFINFL 245
            HP L   + +++F+
Sbjct: 318 RHPVLSQSEVWLHFI 332


>AL023835-2|CAA19487.2|  592|Caenorhabditis elegans Hypothetical
           protein Y37A1B.2b protein.
          Length = 592

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 21/75 (28%), Positives = 42/75 (56%)
 Frame = +3

Query: 21  RRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTDPEFVERRRAGLENFLLRVA 200
           RRY  F+ +H+ L   Y  + IPPLPEK+V      +   + + ++ R+  L+ ++ ++ 
Sbjct: 290 RRYKHFDWLHEQLSAKYVLIPIPPLPEKQV------AGRYEEDLIDHRKHILQLWVNKIC 343

Query: 201 SHPRLCFDDQFINFL 245
            HP L   + +++F+
Sbjct: 344 RHPVLSQSEVWLHFI 358


>Z79754-2|CAB02091.1|  578|Caenorhabditis elegans Hypothetical
           protein F25H2.2 protein.
          Length = 578

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 21/77 (27%), Positives = 39/77 (50%)
 Frame = +3

Query: 21  RRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTDPEFVERRRAGLENFLLRVA 200
           RRY+EF ++H  L+  +     P LP K   + ++ S+    + ++ RR GLE +L ++ 
Sbjct: 201 RRYSEFVELHLALKKHFYDYCFPQLPGK---WPFKLSE----QQLDSRRRGLEQYLEKIC 253

Query: 201 SHPRLCFDDQFINFLQE 251
           +   +   +    FL E
Sbjct: 254 TIRVIAESELVQKFLME 270


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,213,049
Number of Sequences: 27780
Number of extensions: 337260
Number of successful extensions: 921
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)