Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20361
(613 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g06140.1 68418.m00683 phox (PX) domain-containing protein sim... 58 5e-09
At5g58440.1 68418.m07319 phox (PX) domain-containing protein sim... 50 1e-06
At5g07120.1 68418.m00812 phox (PX) domain-containing protein sim... 48 6e-06
At2g25350.1 68415.m03032 phox (PX) domain-containing protein wea... 30 1.4
At2g15900.1 68415.m01822 phox (PX) domain-containing protein wea... 30 1.4
At5g27220.1 68418.m03247 protein transport protein-related low s... 28 4.2
At4g32160.1 68417.m04574 phox (PX) domain-containing protein con... 28 4.2
At1g09050.1 68414.m01009 expressed protein 28 4.2
At1g09040.1 68414.m01008 expressed protein 28 4.2
At4g23780.1 68417.m03420 hypothetical protein 28 5.6
At3g43300.1 68416.m04570 guanine nucleotide exchange family prot... 28 5.6
At1g55050.1 68414.m06288 expressed protein ; expression supporte... 28 5.6
At2g47820.1 68415.m05968 expressed protein 27 7.4
At1g52160.1 68414.m05887 metallo-beta-lactamase family protein 27 7.4
At4g04710.1 68417.m00692 calcium-dependent protein kinase, putat... 27 9.8
>At5g06140.1 68418.m00683 phox (PX) domain-containing protein
similar to SP|O60749 Sorting nexin 2 {Homo sapiens};
contains Pfam profile PF00787: PX domain
Length = 402
Score = 58.0 bits (134), Expect = 5e-09
Identities = 32/78 (41%), Positives = 44/78 (56%)
Frame = +3
Query: 21 RRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTDPEFVERRRAGLENFLLRVA 200
RRY++F + D L Y + IPPLPEK + +R S EF+E RRA L+ F+ R+A
Sbjct: 66 RRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFS----AEFIEMRRAALDIFVNRIA 121
Query: 201 SHPRLCFDDQFINFLQEE 254
HP L + FLQ +
Sbjct: 122 LHPELQQSEDLRTFLQAD 139
>At5g58440.1 68418.m07319 phox (PX) domain-containing protein
similar to SP|O60749 Sorting nexin 2 {Homo sapiens};
contains Pfam profile PF00787: PX domain
Length = 587
Score = 50.0 bits (114), Expect = 1e-06
Identities = 32/87 (36%), Positives = 46/87 (52%)
Frame = +3
Query: 12 TIWRRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTDPEFVERRRAGLENFLL 191
++ RR+ + + D L TY IPP P+K V+ EFVE+RR LE +L
Sbjct: 197 SVRRRFRDVVTLADRLAETYRGFCIPPRPDKSVV---ESQVMQKQEFVEQRRVALEKYLR 253
Query: 192 RVASHPRLCFDDQFINFLQEEMVGGKL 272
R+++HP + D+ FLQ V GKL
Sbjct: 254 RLSAHPVIRNSDELKVFLQ---VQGKL 277
>At5g07120.1 68418.m00812 phox (PX) domain-containing protein
similar to SP|O60749 Sorting nexin 2 {Homo sapiens};
contains Pfam profile PF00787: PX domain
Length = 572
Score = 47.6 bits (108), Expect = 6e-06
Identities = 26/81 (32%), Positives = 42/81 (51%)
Frame = +3
Query: 12 TIWRRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTDPEFVERRRAGLENFLL 191
++ RR+ + + D L +Y IPP P+K ++ EFVE+RR LE +L
Sbjct: 186 SVRRRFRDIVTLADRLAESYRGFCIPPRPDKSIV---ESQVMQKQEFVEQRRVALEKYLR 242
Query: 192 RVASHPRLCFDDQFINFLQEE 254
R+ +HP + D+ FLQ +
Sbjct: 243 RLVAHPVIRNSDELKVFLQAQ 263
>At2g25350.1 68415.m03032 phox (PX) domain-containing protein weak
similarity to SP|Q9UTK5 Abnormal long morphology protein
1 (Sp8) {Schizosaccharomyces pombe}; contains Pfam
profile PF00787: PX domain
Length = 643
Score = 29.9 bits (64), Expect = 1.4
Identities = 22/91 (24%), Positives = 39/91 (42%)
Frame = +3
Query: 15 IWRRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTDPEFVERRRAGLENFLLR 194
I RR+ +F ++ L+ +P P P K L + + +E RR LE+++ +
Sbjct: 87 ILRRFNDFVKLLADLKRAFPRKSFPSAPPKGFLRVKSR------DMLEERRCSLEDWMTK 140
Query: 195 VASHPRLCFDDQFINFLQEEMVGGKLSPIVD 287
+ S L +FL+ E +VD
Sbjct: 141 LLSDIELARSVVVASFLELEATARSACQVVD 171
>At2g15900.1 68415.m01822 phox (PX) domain-containing protein weak
similarity to SP|Q9Y5W8 Sorting nexin 13 {Homo sapiens};
contains Pfam profiles PF00787: PX domain, PF02194: PXA
domain
Length = 1009
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/56 (35%), Positives = 31/56 (55%)
Frame = +3
Query: 21 RRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTDPEFVERRRAGLENFL 188
RRY+ FE++H L+ P+ + LP KR+ S +T+ FV RR L+ +L
Sbjct: 564 RRYSNFERLHRQLK-EIPNYNL-QLPPKRIF-----SSSTEDAFVHRRCIQLDKYL 612
>At5g27220.1 68418.m03247 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1181
Score = 28.3 bits (60), Expect = 4.2
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = +2
Query: 311 IKSLSVSIRLKKPDPEVESFKNYGKQ--LETNLGNFLYTRSKIIEKNYALCKLHANYGKL 484
++ LS+ I K+ + S K + KQ L++ T ++++ K LC + Y +
Sbjct: 464 VRKLSLEIVSKEKTIQQLSEKQHSKQTKLDSTEKCLEETTAELVSKENELCSVKDTYREC 523
Query: 485 FSEWSVIEK 511
W + EK
Sbjct: 524 LQNWEIKEK 532
>At4g32160.1 68417.m04574 phox (PX) domain-containing protein
contains Pfam profile PF00787: PX domain
Length = 723
Score = 28.3 bits (60), Expect = 4.2
Identities = 24/94 (25%), Positives = 41/94 (43%)
Frame = +3
Query: 6 RGTIWRRYTEFEQIHDYLQVTYPHVVIPPLPEKRVLYAWRKSDTTDPEFVERRRAGLENF 185
RG + RR+ +F ++ L+ T+P P P K +L ++ +E RR LE +
Sbjct: 86 RGVL-RRFNDFLKLLTDLKRTFPRKGFPSAPPKGLLRMKSRA------VLEERRCSLEEW 138
Query: 186 LLRVASHPRLCFDDQFINFLQEEMVGGKLSPIVD 287
+ ++ S L +FL+ E VD
Sbjct: 139 ITKLLSDIELARSVVVASFLELEAAARSACQDVD 172
>At1g09050.1 68414.m01009 expressed protein
Length = 916
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 526 LQKAGHYFDSIADSIDSVAEDEEQLADQ 609
L K HYFDS++D + V + E L ++
Sbjct: 384 LVKGDHYFDSVSDILTKVVSEPELLENE 411
>At1g09040.1 68414.m01008 expressed protein
Length = 911
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 526 LQKAGHYFDSIADSIDSVAEDEEQLADQ 609
L K HYFDS++D + V + E L ++
Sbjct: 384 LVKGDHYFDSVSDILTKVVSEPELLENE 411
>At4g23780.1 68417.m03420 hypothetical protein
Length = 148
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 486 LVNGASSRRDGRRIAEGRTLFRFNSGQYRFGC 581
++NG SS G R+A+ R + +F S + F C
Sbjct: 112 VMNGMSSGPSGARVADKRNVNKFESQEGNFKC 143
>At3g43300.1 68416.m04570 guanine nucleotide exchange family protein
similar to SP|Q9Y6D5 Brefeldin A-inhibited guanine
nucleotide-exchange protein 2 {Homo sapiens}; contains
Pfam profile PF01369: Sec7 domain
Length = 1756
Score = 27.9 bits (59), Expect = 5.6
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = -2
Query: 552 IEIMSGLLQSVSHLFSMTLHSLNSL 478
+E++ G+L+ VSH F+ H ++S+
Sbjct: 364 LELLQGMLEGVSHSFTKNFHFIDSV 388
>At1g55050.1 68414.m06288 expressed protein ; expression supported
by MPSS
Length = 914
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 526 LQKAGHYFDSIADSIDSVAEDEEQLAD 606
L K HYFDSI+D + V + E L +
Sbjct: 364 LVKRDHYFDSISDILKKVVSEPELLEE 390
>At2g47820.1 68415.m05968 expressed protein
Length = 805
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 526 LQKAGHYFDSIADSIDSVAED 588
+ K HYFDS+ D ++ VA D
Sbjct: 379 MSKGNHYFDSLTDVLNKVALD 399
>At1g52160.1 68414.m05887 metallo-beta-lactamase family protein
Length = 890
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 72 PHVVIPPLPEKRVLYAWRKSDTTDPEFVERR 164
P +V+ P P KR L A+++ + D EF++ R
Sbjct: 631 PVIVVGPRPLKRFLDAYQRLEDLDMEFLDCR 661
>At4g04710.1 68417.m00692 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calcium-dependent protein
kinase [Nicotiana tabacum] gi|3283996|gb|AAC25423;
contains protein kinase domain, Pfam:PF00069; contains
EF hand domain (calcium-binding EF-hand), Pfam:PF00036,
INTERPRO:IPR002048
Length = 575
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 493 MERHREEMGDGLQKAGHYFDSIADSIDSVAEDEEQLA 603
M RHR E + L KA YFD D + ++E ++A
Sbjct: 400 MHRHRLERDEHLYKAFQYFDK--DGSGHITKEEVEIA 434
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,304,740
Number of Sequences: 28952
Number of extensions: 310101
Number of successful extensions: 764
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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