Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20360
         (688 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    23   1.8  
AF264721-1|AAF75273.1|  126|Tribolium castaneum putative cytochr...    23   2.3  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.1  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   4.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   4.1  

>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/46 (21%), Positives = 21/46 (45%)
 Frame = +3

Query: 354 TIDVKPFKPSSAECLCSVTLEADFMMKKTTSTDPYDSEQMARDFLI 491
           T++    KP+    LC +  +    ++ T   +P D + M  D ++
Sbjct: 64  TLNCHRMKPALFSVLCEIKEKTVLSLRNTQEEEPPDPQLMRLDNML 109


>AF264721-1|AAF75273.1|  126|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q2 protein.
          Length = 126

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = +1

Query: 472 WPEISLFSSPIKFYCRTTAGFLVPREESLVV 564
           +P + L S  +    RT  G+L+P++   ++
Sbjct: 59  YPSVHLISRALGEDVRTQKGYLIPKDTITII 89


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 457  YGSVDVVFFIMKSASKVTLQRHSALEGLKGFTS 359
            YG  D  F      +K+T    + L GLK +T+
Sbjct: 1140 YGPSDTWFDENTKDTKITAASETILHGLKKYTN 1172


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 231 NMLDVTWKVILMY*STVGDGKLIRWTFGCF 142
           +ML + +++ILM  + +G G +     G F
Sbjct: 879 SMLYIGYQIILMIGTVIGPGTIFLMLVGAF 908


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 231 NMLDVTWKVILMY*STVGDGKLIRWTFGCF 142
           +ML + +++ILM  + +G G +     G F
Sbjct: 879 SMLYIGYQIILMIGTVIGPGTIFLMLVGAF 908


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,828
Number of Sequences: 336
Number of extensions: 3095
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)