Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20360
(688 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0049 - 373980-374148,374407-374451,375003-375149,375647-37... 31 1.1
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912 29 2.6
01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33... 29 4.6
06_03_0416 + 20568087-20568702,20568767-20570313 28 6.0
01_01_1106 + 8750597-8754031 28 6.0
02_05_1018 - 33530834-33530926,33531036-33531098,33531193-335312... 28 8.0
>01_01_0049 -
373980-374148,374407-374451,375003-375149,375647-375768,
375938-376042,376123-376234,376314-376381,376617-376766,
377471-377533,377616-377741,377841-377963,378206-378387,
379398-379488
Length = 500
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = +2
Query: 485 PYSVRQSSFTVGQQ---LAFLFQEKKVLSLIVKNLEAVDVQALAAGAN 619
P S+ S+ ++G Q +FL KK L ++ +N + V ALAAG+N
Sbjct: 78 PISIVGSTGSIGTQCFIFSFLCITKKTLDIVAENPDKFRVVALAAGSN 125
>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
Length = 853
Score = 29.5 bits (63), Expect = 2.6
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = +3
Query: 291 DRGTVGFSAPQRKWA-TLSIGQTIDVKPFKPSSAECLCSVTLE--ADFMMKKTTSTDPYD 461
++GTV FSA WA TLS + FK A+ + + E D KK T+T P
Sbjct: 205 EKGTVAFSAGLHGWAFTLSNFAKMYKAKFKVDEAKMMERLWGENYFDHTTKKWTTTAPST 264
Query: 462 SEQMARDFLIQF 497
S + + +QF
Sbjct: 265 SSKTCQRGFVQF 276
>01_01_0047 +
334809-334877,334966-335074,335159-335299,336337-336498,
336577-336734,337180-337310,337385-337472,337587-337690,
338346-338444,339060-339116,339262-339337,339519-339602,
339969-340010,340128-340198,341516-341564,342370-342441,
343149-343286,343393-343473,344166-344353,344591-345188,
345274-345342,346729-346854,347048-347175,347986-348142,
348342-348388,348472-348535,348691-348765,349292-349414,
349797-349982,351179-351303,351390-351459,351974-352101,
352585-352726,353065-353163,353239-353285,353598-353652,
353758-353967,354686-354757,354836-354905,355231-355414,
355521-355644,355732-355863,356252-356317,356805-356852,
357572-357676,357728-357865,358097-358399,358482-358594,
359082-359148,359236-359310,359395-359517,359610-359618,
360156-360320,360401-360502,361545-361696,361794-361995,
362079-362126,362215-362298,362613-362657,363302-363385,
363890-363970,364044-364133,364217-364279,364824-364841,
365238-365378,365494-365550,366091-366185,366275-366383,
367067-367156,367308-367387,367480-367558,367742-367903,
368005-368136,368335-368469,368553-368618,369317-369457,
369575-369648,369685-369910
Length = 2905
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = +2
Query: 161 LMSLPSPTVL*YIKMTFQVTSSILKYLQDHLTLCVQHSVLQWS*PWHGWIFCPSAKMGYP 340
LM L + + K T + + + K +H+ + S+L+ S W G I C K GY
Sbjct: 276 LMDLSATALYLAYKCTPRTSHNKKKLKTEHVMTAIMDSLLRGSLVWSGSICCLIHKYGYR 335
Query: 341 LYRS 352
+ +S
Sbjct: 336 VDKS 339
>06_03_0416 + 20568087-20568702,20568767-20570313
Length = 720
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 294 RGTVGFSAPQRKWATLSIGQTIDVKPFKPSSAECLCS 404
RG +G+ AP+ W T I + +DV F E LCS
Sbjct: 639 RGRLGYLAPE--WLTSVITEKVDVYSFGVVIMEILCS 673
>01_01_1106 + 8750597-8754031
Length = 1144
Score = 28.3 bits (60), Expect = 6.0
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = +1
Query: 154 CPSDELAITNCALIHQDDFPSDIKHIEVSTGPSHTLCSAFGFTMELTVARLDFLP-LSEN 330
C + L I N + + P I H++ + +LCS F T+ ++ L L L+
Sbjct: 491 CALENLEILNLSACNFHSLPDSIGHLQNLQDLNLSLCS-FLVTLPSSIGTLQSLHLLNLK 549
Query: 331 GLPSLSVKPST-*SLSNPLVLNAS 399
G +L + P T SL N LN S
Sbjct: 550 GCGNLEILPDTICSLQNLHFLNLS 573
>02_05_1018 -
33530834-33530926,33531036-33531098,33531193-33531236,
33531973-33532118,33532262-33532281,33532365-33532500,
33532585-33532804,33532905-33533085,33533495-33533518,
33534127-33534341,33534425-33534705,33535987-33536210
Length = 548
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = -1
Query: 475 AICSESYGSVDVVFFIM---KSASKVTLQ--RHSALEGLKGFTSMV*PIERVA 332
AIC+ YGS ++ ++M K+ S++TL +HS + +T+++ P + A
Sbjct: 384 AICTAIYGSFAIIGYLMFGDKTLSQITLNLPKHSFASKVALWTTVINPFTKYA 436
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,943,369
Number of Sequences: 37544
Number of extensions: 330744
Number of successful extensions: 917
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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