Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20360
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_732| Best HMM Match : AAA (HMM E-Value=0)                           41   8e-04
SB_27495| Best HMM Match : VWA (HMM E-Value=0)                         28   8.1  
SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)                   28   8.1  

>SB_732| Best HMM Match : AAA (HMM E-Value=0)
          Length = 388

 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 14/32 (43%), Positives = 27/32 (84%), Gaps = 1/32 (3%)
 Frame = +1

Query: 154 CPSDELAITNCALIHQDDFPSD-IKHIEVSTG 246
           CPSD+L+++NC +++++D  ++ +KH+EV TG
Sbjct: 9   CPSDKLSLSNCLIVNENDLNAEKVKHVEVRTG 40



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 16/39 (41%), Positives = 29/39 (74%)
 Frame = +2

Query: 506 SFTVGQQLAFLFQEKKVLSLIVKNLEAVDVQALAAGANA 622
           +F++GQQ+ F F +KK+L L++K++E +DV  L A + +
Sbjct: 112 AFSLGQQVPFGFHDKKLLLLVIKSMEVIDVGLLRAASES 150



 Score = 34.3 bits (75), Expect = 0.094
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 258 FVFSIRFYNGVDRGTVGFSAPQRKWATLSIGQTID 362
           F+F+    + + +G+ GFS  QRKW ++S+   ID
Sbjct: 45  FIFTTMVSDDIPQGSAGFSLIQRKWTSVSLNSYID 79


>SB_27495| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1064

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 6/58 (10%)
 Frame = -2

Query: 672 CTEASGSSRPIRTR------RGTALAPAAKACTSTASKFFTINDKTFFSWNKKASCCP 517
           C E  G  +P+ +       RGT   P+   C  TA KF     +  +    +  CCP
Sbjct: 791 CKEKPGKCKPVESPVDPVICRGTLPNPSRIPCGDTAKKFGQSQQENDWDCPGETKCCP 848


>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
          Length = 492

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -1

Query: 649 PAHPHAAGHGVGSGR*SLHVDG 584
           P H H  GHG G G   +H DG
Sbjct: 151 PGHGHGPGHGHGHGAGLVHGDG 172


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,566,906
Number of Sequences: 59808
Number of extensions: 381940
Number of successful extensions: 1511
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1510
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)