Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20360
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z96100-7|CAB09531.1|  824|Caenorhabditis elegans Hypothetical pr...    77   9e-15
Z79698-2|CAB01976.1|  824|Caenorhabditis elegans Hypothetical pr...    77   9e-15
Z79698-1|CAL44963.1|  758|Caenorhabditis elegans Hypothetical pr...    77   9e-15
Z72506-3|CAA96617.1|  310|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z46787-9|CAA86747.1|  274|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U80026-1|AAC25844.1|  355|Caenorhabditis elegans Fucosyl transfe...    28   7.2  

>Z96100-7|CAB09531.1|  824|Caenorhabditis elegans Hypothetical
           protein H15N14.2a protein.
          Length = 824

 Score = 77.4 bits (182), Expect = 9e-15
 Identities = 35/84 (41%), Positives = 51/84 (60%)
 Frame = +3

Query: 255 HFVFSIRFYNGVDRGTVGFSAPQRKWATLSIGQTIDVKPFKPSSAECLCSVTLEADFMMK 434
           H++FSIR    +  G + F  P RKWA LS+ Q + V PF    +E + S+ L ADF  K
Sbjct: 108 HYIFSIRNDGSIKPGEIAFGVPHRKWAALSLDQEVRVTPFTFQQSEYVGSMILTADFNAK 167

Query: 435 KTTSTDPYDSEQMARDFLIQFANQ 506
           K  +++P +++ MAR+F IQF  Q
Sbjct: 168 KNVTSEPLNADLMAREFSIQFGGQ 191



 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 14/75 (18%)
 Frame = +2

Query: 506 SFTVGQQLAFLFQEKK-----VLSLIVKNLEAVDVQALAAGANAV---------PRRVRM 643
           +F+ G Q+AF F++K+      LSL+VK++E  D+   AA A+           P+++  
Sbjct: 192 AFSKGMQMAFRFEDKEKNKTHTLSLVVKSIEGFDIGKAAAAASGASNTDSSATKPKQIEA 251

Query: 644 GRLLPDASVQFDKAE 688
           G LLP++ + FDK E
Sbjct: 252 GELLPNSVIVFDKEE 266



 Score = 34.3 bits (75), Expect = 0.083
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +1

Query: 157 PSDELAITNCALIHQDDFPS-DIKHIEVSTGPSH 255
           PS+E  + N A +++ DF    IKH+ V+ GP+H
Sbjct: 74  PSEEHTLANYAYVNRSDFDDKQIKHVRVNPGPAH 107


>Z79698-2|CAB01976.1|  824|Caenorhabditis elegans Hypothetical
           protein H15N14.2a protein.
          Length = 824

 Score = 77.4 bits (182), Expect = 9e-15
 Identities = 35/84 (41%), Positives = 51/84 (60%)
 Frame = +3

Query: 255 HFVFSIRFYNGVDRGTVGFSAPQRKWATLSIGQTIDVKPFKPSSAECLCSVTLEADFMMK 434
           H++FSIR    +  G + F  P RKWA LS+ Q + V PF    +E + S+ L ADF  K
Sbjct: 108 HYIFSIRNDGSIKPGEIAFGVPHRKWAALSLDQEVRVTPFTFQQSEYVGSMILTADFNAK 167

Query: 435 KTTSTDPYDSEQMARDFLIQFANQ 506
           K  +++P +++ MAR+F IQF  Q
Sbjct: 168 KNVTSEPLNADLMAREFSIQFGGQ 191



 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 14/75 (18%)
 Frame = +2

Query: 506 SFTVGQQLAFLFQEKK-----VLSLIVKNLEAVDVQALAAGANAV---------PRRVRM 643
           +F+ G Q+AF F++K+      LSL+VK++E  D+   AA A+           P+++  
Sbjct: 192 AFSKGMQMAFRFEDKEKNKTHTLSLVVKSIEGFDIGKAAAAASGASNTDSSATKPKQIEA 251

Query: 644 GRLLPDASVQFDKAE 688
           G LLP++ + FDK E
Sbjct: 252 GELLPNSVIVFDKEE 266



 Score = 34.3 bits (75), Expect = 0.083
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +1

Query: 157 PSDELAITNCALIHQDDFPS-DIKHIEVSTGPSH 255
           PS+E  + N A +++ DF    IKH+ V+ GP+H
Sbjct: 74  PSEEHTLANYAYVNRSDFDDKQIKHVRVNPGPAH 107


>Z79698-1|CAL44963.1|  758|Caenorhabditis elegans Hypothetical
           protein H15N14.2b protein.
          Length = 758

 Score = 77.4 bits (182), Expect = 9e-15
 Identities = 35/84 (41%), Positives = 51/84 (60%)
 Frame = +3

Query: 255 HFVFSIRFYNGVDRGTVGFSAPQRKWATLSIGQTIDVKPFKPSSAECLCSVTLEADFMMK 434
           H++FSIR    +  G + F  P RKWA LS+ Q + V PF    +E + S+ L ADF  K
Sbjct: 42  HYIFSIRNDGSIKPGEIAFGVPHRKWAALSLDQEVRVTPFTFQQSEYVGSMILTADFNAK 101

Query: 435 KTTSTDPYDSEQMARDFLIQFANQ 506
           K  +++P +++ MAR+F IQF  Q
Sbjct: 102 KNVTSEPLNADLMAREFSIQFGGQ 125



 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 14/75 (18%)
 Frame = +2

Query: 506 SFTVGQQLAFLFQEKK-----VLSLIVKNLEAVDVQALAAGANAV---------PRRVRM 643
           +F+ G Q+AF F++K+      LSL+VK++E  D+   AA A+           P+++  
Sbjct: 126 AFSKGMQMAFRFEDKEKNKTHTLSLVVKSIEGFDIGKAAAAASGASNTDSSATKPKQIEA 185

Query: 644 GRLLPDASVQFDKAE 688
           G LLP++ + FDK E
Sbjct: 186 GELLPNSVIVFDKEE 200



 Score = 34.3 bits (75), Expect = 0.083
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +1

Query: 157 PSDELAITNCALIHQDDFPS-DIKHIEVSTGPSH 255
           PS+E  + N A +++ DF    IKH+ V+ GP+H
Sbjct: 8   PSEEHTLANYAYVNRSDFDDKQIKHVRVNPGPAH 41


>Z72506-3|CAA96617.1|  310|Caenorhabditis elegans Hypothetical
           protein F07A5.2 protein.
          Length = 310

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -3

Query: 341 EGSPFSLRGRKSNRATVNSIVKPNAEHKV*DGPVDT 234
           EGS FS R RKS+   V+S ++   E  V D  +DT
Sbjct: 259 EGSSFSKRARKSSSGDVDSSIRELGE-TVSDAMIDT 293


>Z46787-9|CAA86747.1|  274|Caenorhabditis elegans Hypothetical
           protein C16C10.9 protein.
          Length = 274

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 440 CFLHHEVGFQGYAAEAFSTRGFERL 366
           C L H++GFQ + AE+F     +RL
Sbjct: 224 CILMHQLGFQEWTAESFDVIVVDRL 248


>U80026-1|AAC25844.1|  355|Caenorhabditis elegans Fucosyl
           transferase protein 2 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 163 DELAITNCALIHQDDFPSDIKHIEVST 243
           DEL   NC  I + D+ +D  H E S+
Sbjct: 200 DELRFKNCVHIRRGDYVNDFDHAETSS 226


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,570,902
Number of Sequences: 27780
Number of extensions: 290489
Number of successful extensions: 660
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)