Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20360
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04910.1 68417.m00714 AAA-type ATPase family protein similar ...    46   3e-05
At3g20910.1 68416.m02643 CCAAT-binding transcription factor (CBF...    30   1.3  
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex...    30   1.7  
At5g18430.1 68418.m02171 GDSL-motif lipase/hydrolase family prot...    28   6.7  
At5g19470.1 68418.m02320 MutT/nudix family protein similar to SP...    27   8.8  

>At4g04910.1 68417.m00714 AAA-type ATPase family protein similar to
           SP|P18708 Vesicular-fusion protein NSF
           (N-ethylmaleimide-sensitive fusion protein)
           (NEM-sensitive fusion protein) {Cricetulus griseus};
           contains Pfam profiles PF00004: ATPase AAA family,
           PF02359: Cell division protein 48 (CDC48) N-terminal
           domain; contains non-consensus AT-AC splice sites at
           intron 2
          Length = 742

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 25/85 (29%), Positives = 44/85 (51%)
 Frame = +3

Query: 258 FVFSIRFYNGVDRGTVGFSAPQRKWATLSIGQTIDVKPFKPSSAECLCSVTLEADFMMKK 437
           F+ S+  +  +  G +  +A QR+ A +S G  + V  F P     L  +TLE +F +KK
Sbjct: 54  FILSLCGHGSIRDGNIALNAIQRRHARVSTGDMVSVSRFVPPENFDLAMLTLELEF-VKK 112

Query: 438 TTSTDPYDSEQMARDFLIQFANQVL 512
            T ++  D+  ++     ++ NQVL
Sbjct: 113 GTKSEQVDAALLSTQLKRKYTNQVL 137


>At3g20910.1 68416.m02643 CCAAT-binding transcription factor
           (CBF-B/NF-YA) family protein contains Pfam profile:
           PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
           subunit B
          Length = 303

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 673 LHRGVGQQPAHPHAAGHGVG 614
           LH G+ Q P HP   GH VG
Sbjct: 101 LHHGITQPPPHPQLVGHTVG 120


>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 956

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/58 (29%), Positives = 31/58 (53%)
 Frame = +3

Query: 249 ISHFVFSIRFYNGVDRGTVGFSAPQRKWATLSIGQTIDVKPFKPSSAECLCSVTLEAD 422
           +S+F FS  F+NG  +  V  S+ ++++   S    +  +P + S+ ECL  V+   D
Sbjct: 336 LSNFTFSYNFFNGEAQSCVPGSSQEKQFDDTS--NCLQNRPNQKSAKECLPVVSRPVD 391


>At5g18430.1 68418.m02171 GDSL-motif lipase/hydrolase family protein
           similar to family II lipase EXL1 GI:15054382 from
           [Arabidopsis thaliana]; contains Pfam profile PF00657:
           GDSL-like Lipase/Acylhydrolase
          Length = 362

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = +2

Query: 461 FGTNGQRFPYSVRQSSFTVGQQLAFLFQEKKVLSLIVKNLEAVDVQALAAG 613
           F  N   FPYS R   FT+   +  L  E K + L + +L    V    AG
Sbjct: 170 FVNNYFLFPYSARSRQFTLPDYVRLLISEYKKILLRLNSLGVGRVLVTGAG 220


>At5g19470.1 68418.m02320 MutT/nudix family protein similar to
           SP|P41888 Thiamine pyrophosphokinase (EC 2.7.6.2) (TPK)
           (Thiamine kinase) {Schizosaccharomyces pombe}; contains
           Pfam profile PF00293: NUDIX domain
          Length = 365

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -3

Query: 404 AAEAFSTRGFERLHVDGLTDREGSPFSLRGRKSNRATVNSIVKPNAEHKV*DG-PVDTSI 228
           AA  F  +G+  +HV+G  +R+G  F   G+   R+   S      +H V  G P   S+
Sbjct: 188 AAPYFGLKGYA-IHVNGYVERDGQKFLWIGK---RSLAKSTYPGKLDHLVAGGLPHGISV 243

Query: 227 C 225
           C
Sbjct: 244 C 244


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,719,687
Number of Sequences: 28952
Number of extensions: 268294
Number of successful extensions: 666
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)