Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20358
(758 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory... 31 0.24
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 30 0.31
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 29 0.95
SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces... 28 1.7
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 28 1.7
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 27 2.2
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 27 2.2
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 3.8
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 27 3.8
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 26 5.1
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 5.1
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer... 26 5.1
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 26 5.1
SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces pomb... 26 5.1
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 26 5.1
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 26 6.7
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 26 6.7
SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation... 26 6.7
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 26 6.7
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 25 8.9
SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce... 25 8.9
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce... 25 8.9
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces... 25 8.9
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su... 25 8.9
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c... 25 8.9
>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 545
Score = 30.7 bits (66), Expect = 0.24
Identities = 17/64 (26%), Positives = 32/64 (50%)
Frame = +2
Query: 86 TKLTEYPETTQKTFEAETPATDTTESDEDVKAPVKTEFEKATSSPVLTSTEFNANLLVNM 265
+K EY +KT EA+ T + + + + VKT+FE + ++T+T + ++
Sbjct: 24 SKQKEY-RIEEKTNEAQREEIITWKDNREDEGEVKTDFEVVNNENIITTTPKHQTVITPK 82
Query: 266 KYMK 277
Y K
Sbjct: 83 SYRK 86
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 30.3 bits (65), Expect = 0.31
Identities = 20/73 (27%), Positives = 34/73 (46%)
Frame = +2
Query: 32 TSETVVQDQEITTAIPVSTKLTEYPETTQKTFEAETPATDTTESDEDVKAPVKTEFEKAT 211
TS +T+ +ST ++ +T T ++ P T T V KT+F+ T
Sbjct: 352 TSSISSTSSSSSTSSAISTISQDHTKTV--TSVSDEPTTITASGATSVTTTTKTDFDTVT 409
Query: 212 SSPVLTSTEFNAN 250
++ V TST +A+
Sbjct: 410 TTIVSTSTLISAS 422
Score = 25.8 bits (54), Expect = 6.7
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = +1
Query: 274 EKTTDVPTTEFVTSYSKLPENAETSDISDLDQTTDSAILSTTSVSDEHKTVTEAEKSPIV 453
E T+ + + S ++ +S IS + Q + TSVSDE T+T + + +
Sbjct: 342 ESTSSIALNPTSSISSTSSSSSTSSAISTISQDHTKTV---TSVSDEPTTITASGATSVT 398
Query: 454 TT 459
TT
Sbjct: 399 TT 400
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 28.7 bits (61), Expect = 0.95
Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = +2
Query: 14 SKTGDSTSETVVQDQEITTAIPV-STKLTEYPETTQKTFEAETPATDTTESDEDVKAPVK 190
S T STS T + TTA ST LT TT T + TP T + +
Sbjct: 332 STTATSTSSTPLSSVNSTTATSASSTPLTSVNSTT-ATSASSTPLTSVNSTSATSASSTP 390
Query: 191 TEFEKATSSPVLTST 235
+T+S ++ST
Sbjct: 391 LTSANSTTSTSVSST 405
Score = 26.6 bits (56), Expect = 3.8
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Frame = +2
Query: 14 SKTGDSTSETVVQDQEITTAIPVS-TKLTEYPETTQKTFEAETPATDTTESDEDVKAPVK 190
S T S S T + TTA S T LT TT T + TP T + +
Sbjct: 446 STTATSASSTPLSSVNSTTATSASSTPLTSVNSTTA-TSASSTPLTSVNSTSATSASSTP 504
Query: 191 TEFEKATSSPVLTST 235
+T+S ++ST
Sbjct: 505 LTSANSTTSTSVSST 519
Score = 25.4 bits (53), Expect = 8.9
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +2
Query: 29 STSETVVQDQEITTAIPVSTKLTEYPETTQKT-FEAETPATDTTESDEDVKAPVKTEFEK 205
+ + T+ + ITT + T + T + F+ + T T+ SD+DVK +
Sbjct: 939 NVTATITGNVTITTGDLTTIDPTTFTSTYLSSGFQTVSNTTATSGSDDDVKTASTSSSTS 998
Query: 206 ATSSPVLTSTEFNA 247
TSS +S+ +A
Sbjct: 999 YTSSSSSSSSTTSA 1012
>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 208
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1
Query: 328 PENAETSDISDLDQTTDSAILSTTSVS-DEHKTVTEAEKS 444
P+ + +D+S +QT +A+L T + +E K +TE K+
Sbjct: 133 PKKGDATDVSGAEQTDVAAVLPITQEAVEEAKPITEEAKN 172
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +2
Query: 77 PVSTKLTEYPETTQKTFEAETPATDTTESDEDVKAPVKTEFEKATSSPVLTSTE 238
P + ++ E ++K E +T + K PV+ F K SSPV S +
Sbjct: 455 PTTPSASKVEEPSKKRDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVTFSED 508
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 438 KITNRYYRNTLYGNNK*Y*RKQRIVDSTKYED 533
K+ NR + T+ GNNK K I+ + KY D
Sbjct: 758 KVGNRLWSPTIAGNNKRNLLKDIIIHTAKYRD 789
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 582 PVDIPVYTADYGQEVKETTNIPETYETTAADTKDITTELAKGE 710
P + Y ++ +EVKET +P+ + D +TE +K E
Sbjct: 35 PFILTAYPSNEEKEVKETDIVPDENKVNELDVHKQSTEFSKQE 77
>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 26.6 bits (56), Expect = 3.8
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -2
Query: 187 NWGLYVFV*FCSVS 146
NWG+Y+F+ CSV+
Sbjct: 205 NWGMYMFIFMCSVA 218
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 26.6 bits (56), Expect = 3.8
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +2
Query: 23 GDSTSETVVQDQEITTAIPVS--TKLTEYPETTQKTFEAETPATDTTES 163
G+++ T T+A P+S TK E T F PATDTT S
Sbjct: 336 GNTSKPTENTSTTATSAPPLSNNTKPAEGANQTSSGFSFGKPATDTTTS 384
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 137 TPATDTTESDEDVKAPVKTEFEKATSSPVLTS 232
T ++ T ++D+D K +F+K S PVLTS
Sbjct: 395 TKSSSTYKADDDSIYHRKEDFKKQPSYPVLTS 426
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +3
Query: 627 KETTNIPETYETTAADTKDITTELAKGEIPDITSIQDDMKSLKS 758
K + P T T+A+ TT K + T+++DD+ S S
Sbjct: 555 KAVESTPSTLPTSASTNAAATTTTKKPKAAKSTAVRDDVSSASS 598
>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
Mam4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 236
Score = 26.2 bits (55), Expect = 5.1
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -1
Query: 701 SKFGSNVLGISCSCFICLGY-VSGFFYFLSIVSRVNWNINGNF 576
S F V G+ +I GY + GFF FLS+ + + I F
Sbjct: 17 SAFLGCVFGLGFFVWIIYGYSIGGFFAFLSLFHLLEFYITARF 59
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 669 LQLFHMSRVC*WFLLLLVHSQPCKLEYQREFHQ 571
LQ + S V +F + V P +L Y+REFH+
Sbjct: 612 LQKYRESCVSSYFFIKCVEQIPDELLYKREFHK 644
>SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 460
Score = 26.2 bits (55), Expect = 5.1
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +2
Query: 32 TSETVVQDQEITTAIPVSTKLTEYPETTQKTFEAETPATDTTE 160
+S+TV+ +I T + +ST LT PE K+ A+ ATD E
Sbjct: 335 SSKTVLDSIQILTGV-LST-LTVNPENIAKSLTADMLATDLAE 375
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 26.2 bits (55), Expect = 5.1
Identities = 21/78 (26%), Positives = 35/78 (44%)
Frame = +2
Query: 11 ESKTGDSTSETVVQDQEITTAIPVSTKLTEYPETTQKTFEAETPATDTTESDEDVKAPVK 190
+S T +++ +D E + S T+ T+ F T D DED+++
Sbjct: 605 QSTTSGLNFDSIPKDNEAASIFGSSQVSTK--NTSGFQFSNNTLLADNV--DEDIESDHD 660
Query: 191 TEFEKATSSPVLTSTEFN 244
T+ E+ +S V STE N
Sbjct: 661 TKIEELANSDVEPSTEQN 678
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 25.8 bits (54), Expect = 6.7
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Frame = +2
Query: 92 LTEYPE-TTQKTFEAETPATDTTESDEDVKAPVKTEFEKATSSPVLTSTEFNANLLVNMK 268
L++Y + TTQK FE DT+E D + + F KA + +L+ +N ++ +
Sbjct: 705 LSKYTQWTTQKFFEEANKQDDTSEVQNDNSS---SWFSKARN--ILS----GSNEVLPFR 755
Query: 269 YMKKPQMCLPLNL*HHTLN-YQKMQK 343
+ P MC+ LN H ++ Y+++++
Sbjct: 756 F--SPTMCILLNNIHFAMHAYEELEQ 779
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1283
Score = 25.8 bits (54), Expect = 6.7
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +2
Query: 77 PVSTKLTEYPETTQKTFEAETPATDTTESDEDVKAPVK-TEFEKATSSPVLTSTEFNAN 250
P + +TE + KTF + PA+ TT +V P T E S ++ F AN
Sbjct: 488 PTAGTITETIVSGSKTFTSTFPASGTTSGTVEVVEPTAGTITETIVSGSKAFTSTFPAN 546
>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
1|||Manual
Length = 321
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/47 (25%), Positives = 20/47 (42%)
Frame = +3
Query: 615 GQEVKETTNIPETYETTAADTKDITTELAKGEIPDITSIQDDMKSLK 755
G E E + KD+TT + +GE+ ++ + MK K
Sbjct: 41 GPEASSAGATDEDDSERKSSAKDLTTPVTEGEVDELKDMFSSMKKKK 87
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 25.8 bits (54), Expect = 6.7
Identities = 21/64 (32%), Positives = 33/64 (51%)
Frame = +2
Query: 26 DSTSETVVQDQEITTAIPVSTKLTEYPETTQKTFEAETPATDTTESDEDVKAPVKTEFEK 205
+ ++ T VQ T IP ST+ +Y +TT FEA + T+ T + +V P +F+
Sbjct: 1001 EMSTTTHVQHPNSET-IPSSTE-NQYFDTTSGAFEANS-NTEVTVNSNEVSQPF--DFDT 1055
Query: 206 ATSS 217
A S
Sbjct: 1056 ANES 1059
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 25.4 bits (53), Expect = 8.9
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Frame = +1
Query: 274 EKTTDVPTTEFVTSYSKLPEN----AETSDIS-DLDQTTDSAILSTTSVSDEHK 420
EK TD+ E + KL + E+ +S D+D+T+D L +EHK
Sbjct: 413 EKNTDMKKLERIEGLVKLVDEYKLKLESMPVSLDVDETSDEVSLQKRRRKNEHK 466
>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -1
Query: 650 LGYVSGFFYFLSIVSRVNWNINGNFTR 570
LG+ G FY LS++ +W + F +
Sbjct: 180 LGWTMGMFYHLSLLPGTSWRLPIRFVK 206
>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 25.4 bits (53), Expect = 8.9
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +1
Query: 259 EHEVHEKTTDVPTTEFVTSYSKLPENAETSDISDLDQTTDSAILSTTSVSD 411
+H+V T +PT+E +S + P A S +D + T+ LST + D
Sbjct: 183 QHQVLVGQTAIPTSEASSSINNTPLQAPVSSFADQNAFTNP--LSTFASPD 231
>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/42 (26%), Positives = 17/42 (40%)
Frame = +2
Query: 101 YPETTQKTFEAETPATDTTESDEDVKAPVKTEFEKATSSPVL 226
YP T ++F+ TP + P + EK P+L
Sbjct: 61 YPTTAGESFQNLTPVNSNPSNQNSKTEPNPDDVEKCIQDPLL 102
>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 25.4 bits (53), Expect = 8.9
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +2
Query: 59 EITTAIPVSTKLTEYPETTQKTFEAETPATDTTESDEDVKAPVKTEFEKATSSPVLTST 235
++TTA + K T+Y +K T+ SD D++ E+ S P + ST
Sbjct: 360 DVTTATSLQNKSTDYGSVKRK--------TENLNSDSDIQNKRTKSIEENNSLPPIVST 410
>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 596
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/54 (24%), Positives = 22/54 (40%)
Frame = +2
Query: 14 SKTGDSTSETVVQDQEITTAIPVSTKLTEYPETTQKTFEAETPATDTTESDEDV 175
S + V+ T++ +++ Y E T+ E+P T S EDV
Sbjct: 433 SNPSSGAASAVITRNPSETSLADLSRVPSYKEATRSAVPLESPLQSTLPSYEDV 486
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,900,466
Number of Sequences: 5004
Number of extensions: 60623
Number of successful extensions: 260
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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