Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20358
(758 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1745 - 39609894-39610030,39610127-39610223,39613856-396139... 35 0.081
05_06_0276 + 26878732-26879574,26879920-26880387,26880800-268810... 31 1.00
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 30 2.3
06_03_0097 - 16607936-16608712,16610114-16610320,16611220-166113... 29 5.3
10_08_0248 + 16161518-16163437 28 7.0
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 28 7.0
12_02_0947 + 24680119-24681497,24682213-24682275,24683380-246842... 28 9.3
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 28 9.3
01_01_0302 + 2473556-2473890,2475454-2475517,2475927-2476118 28 9.3
>01_06_1745 -
39609894-39610030,39610127-39610223,39613856-39613996,
39614094-39614272,39615067-39615111,39615802-39615858,
39615935-39616163,39616348-39616418,39619527-39619635
Length = 354
Score = 34.7 bits (76), Expect = 0.081
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Frame = +2
Query: 11 ESKTGDSTSETVVQDQEITTAIP-VSTKLTEYP-ETTQKTFEAETPATDTTESDEDVKAP 184
E + D+ E D+E TTA ST E P + + + E ETPA +T E +E V P
Sbjct: 230 EDSSDDADYEGKSSDEEETTAKEGESTDEKETPAKEGESSDEEETPAKNTKEENEPVVTP 289
Query: 185 VKT-EFEKATSSPVLTSTEFNAN 250
+KT E A +T + N
Sbjct: 290 LKTFPHEMAKIEAPITDNKTGTN 312
>05_06_0276 +
26878732-26879574,26879920-26880387,26880800-26881021,
26881153-26881278,26881309-26881573,26881719-26881936
Length = 713
Score = 31.1 bits (67), Expect = 1.00
Identities = 17/59 (28%), Positives = 32/59 (54%)
Frame = +1
Query: 328 PENAETSDISDLDQTTDSAILSTTSVSDEHKTVTEAEKSPIVTTEIPSMGITNDIEENK 504
P ++SD +D D+ D L+ SV ++ + ++ KSP V + +M ND++ +K
Sbjct: 332 PIECDSSDEADGDEQEDE--LTPLSVGNKRTSPSKKSKSPAVRAMVSNMREYNDLQRSK 388
>02_01_0246 +
1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = +2
Query: 5 TRESKTGDSTSETVVQDQEITTAIPVSTKLTEYPETTQKTFEAETPATDTTESDEDVKAP 184
T +++ DS+ E+ I T IP L E P Q E +DT +++ P
Sbjct: 184 TVDAQDLDSSKESKEAQPAIMTDIPADEVLAEAPAGIQSPLEPNVGDSDTVPGNKETDDP 243
Query: 185 VKTE 196
K +
Sbjct: 244 AKED 247
>06_03_0097 - 16607936-16608712,16610114-16610320,16611220-16611336,
16611409-16611690,16611811-16612294,16612791-16612929,
16613138-16613243,16613396-16613562,16613632-16613707,
16614173-16614321,16614813-16614874,16615232-16615335,
16616856-16616950,16617046-16617136,16617785-16617922
Length = 997
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = +1
Query: 259 EHEVHEKTTDVPTT---EFVTSYSKLPENAETSDISDLDQTTDSAILSTTSVSDEHKT 423
+ E+ + DVP+ E Y K AE S + T S L + S SD+H++
Sbjct: 838 KEEIANASADVPSDNVEELGLKYEKQEHRAEKSRSRSSHRQTQSGSLDSDSTSDQHRS 895
>10_08_0248 + 16161518-16163437
Length = 639
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -1
Query: 419 LCSSDTEVVLKIALSVVWSKSEMSE-VSAFSGNLEYD 312
+C +TE V+K ++W + E VSA S +++D
Sbjct: 466 VCEGETEAVIKRPWYLLWKSRRLMEIVSAISSRMDWD 502
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1
Query: 307 VTSYSKLPENAETSDISDLDQTTDSAILSTTSVSDEHKTVTEA-EKSPIVTTEIPSMGIT 483
V S P E ++ D+T+ ++ + DE +TVTE +K IV E ++
Sbjct: 2576 VQDESSTPTYVEVEEVDLPDETSYIGDPNSAKLEDEKQTVTEENDKMVIVKVESSVKNLS 2635
Query: 484 NDIEEN 501
++ EN
Sbjct: 2636 LEVAEN 2641
>12_02_0947 +
24680119-24681497,24682213-24682275,24683380-24684239,
24684399-24684772,24685932-24686112,24686201-24686220
Length = 958
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 570 PGEIPVDIPVYTADYGQEVKETTNIPETY 656
PG+ PVD VYTA G T +P +
Sbjct: 100 PGQFPVDYYVYTAGEGLRRPSLTRLPPCF 128
>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = +1
Query: 283 TDVPTTEFVTSYSKLPENAETSDISDLDQTTDSAILSTTSVSDEHKTVTEAEKSPIVTTE 462
T+ P T LPE+ ET +S D + + S SDEH V E +
Sbjct: 3246 TETPNALLNTLIPALPESEETK-LSGSDTDGKTIMAELASSSDEHDKVHEVGNETGDDNK 3304
Query: 463 IPS 471
+PS
Sbjct: 3305 LPS 3307
>01_01_0302 + 2473556-2473890,2475454-2475517,2475927-2476118
Length = 196
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 683 VLGISCSCFICLGYVSGFFYFL 618
+LG C IC G ++GFFY +
Sbjct: 150 ILGDVVVCMICRGDINGFFYLI 171
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,043,182
Number of Sequences: 37544
Number of extensions: 326901
Number of successful extensions: 950
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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