Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20357
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    27   3.5  
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    26   4.7  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    26   6.2  

>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = -3

Query: 661 LCHSTQACFNSSGSWLVENISVISGSKDRSHLLSFLYEQIFAVA*FDSIPDQFSSK 494
           LC  T +C  +   WL ++I   +G     + LSF  E     A  DS+  + SSK
Sbjct: 580 LCVLTSSCLQNGDVWLTKDIR--TGLSQIFNRLSFFLENTNQTAPDDSVLVRCSSK 633


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 357 LTSRESSLGGDQDVRVAGLPG 419
           L ++  + GGD+++RVA  PG
Sbjct: 41  LAAKNVNAGGDEEIRVANYPG 61


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/45 (22%), Positives = 26/45 (57%)
 Frame = +1

Query: 277 ASLAEWEYTSNITKENEEKSIQTHLELSRQEKAAWEETKMYGWQD 411
           +SL+ W      +KE ++ ++ +++++SR    A     ++G+Q+
Sbjct: 187 SSLSSWMMILESSKEIKDSTLLSYMQISRYTLKACRRLVVFGFQN 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,667,874
Number of Sequences: 5004
Number of extensions: 49107
Number of successful extensions: 144
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)