Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20357
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0213 + 20974712-20975413                                         31   0.91 
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043...    30   2.1  

>02_04_0213 + 20974712-20975413
          Length = 233

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +1

Query: 310 ITKENEEKSIQTHLELSRQEKAAWEETKMYGWQDFQDFTLRRMFKKYSQLGVAALP 477
           + +E EE+ +    E  R  +A  EE     W+DF D  L ++ ++  Q   A  P
Sbjct: 73  VDEEEEEERMDQLWERDRDARAGDEERMDLLWEDFNDELLLQLRRRQQQRAAAGTP 128


>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
            21204453-21205031,21205176-21205484,21205638-21205718,
            21205971-21206279,21207430-21207816,21207964-21208767,
            21208856-21209218,21209437-21209667,21209934-21210278,
            21210494-21210712,21210759-21210815,21210978-21211322,
            21211538-21211756,21211803-21211859,21212022-21212366,
            21212584-21212814,21213100-21213458
          Length = 4322

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
 Frame = +3

Query: 393  DVRVAGLPGFHVA*NVQEIQSAGRCGSA*RQIPSFDE--N*SGMESNYATAKICSYKNES 566
            D   A  PG  VA + Q++ SAGR  S   Q+PS DE  N    +S++      S   + 
Sbjct: 2749 DAPHATAPG-EVALSEQKLASAGRDSSRAAQLPSSDEPRNEQIKDSDHTAQPFSSAAPDQ 2807

Query: 567  KCDLSL---EPEITEIFSTSQDP 626
              DL     +P+I+    TS+ P
Sbjct: 2808 AKDLQRTFGQPDISRAPGTSESP 2830


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,806,494
Number of Sequences: 37544
Number of extensions: 336994
Number of successful extensions: 852
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)