Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20357
         (717 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.014
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)                     37   0.014
SB_31634| Best HMM Match : Peptidase_M2 (HMM E-Value=0)                34   0.10 
SB_29362| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.23 
SB_49475| Best HMM Match : Syntaxin (HMM E-Value=8.5)                  31   1.2  
SB_48511| Best HMM Match : Ank (HMM E-Value=4.6e-20)                   29   3.8  
SB_27384| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24)                  28   6.6  

>SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1049

 Score = 37.1 bits (82), Expect = 0.014
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +3

Query: 510 SGMESNYATAKICSYKNESKCDLSLEPEITEIFSTSQDPEELKHAWVEWHN 662
           + M   Y+T K+C     +   +SL+P++  + S S++ +EL  AW  W +
Sbjct: 257 TNMTEIYSTGKVCLNITRNNTCMSLDPDLGNLMSRSRNQDELVWAWRGWRD 307


>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 657

 Score = 37.1 bits (82), Expect = 0.014
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +3

Query: 510 SGMESNYATAKICSYKNESKCDLSLEPEITEIFSTSQDPEELKHAWVEWHN 662
           + M   Y+T K+C     +   +SL+P++  + S S++ +EL  AW  W +
Sbjct: 541 TNMTEIYSTGKVCLNITRNNTCMSLDPDLGNLMSRSRNQDELVWAWRGWRD 591


>SB_31634| Best HMM Match : Peptidase_M2 (HMM E-Value=0)
          Length = 663

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 17/54 (31%), Positives = 32/54 (59%)
 Frame = +3

Query: 495 FDEN*SGMESNYATAKICSYKNESKCDLSLEPEITEIFSTSQDPEELKHAWVEW 656
           + +  S M   Y++AK+ +    +  +LSL P++TE+ + S++  EL  AW +W
Sbjct: 118 YSQRESEMTEIYSSAKVTNPAIGT--NLSLNPQLTELMANSRNSPELLAAWRDW 169


>SB_29362| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 587

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = +3

Query: 516 MESNYATAKICSYKNESKCDLSLEPEITEIFSTSQDPEELKHAWVEWHN 662
           M+  Y + K+    + SK  LSL+P + +I S S+D E LK  W  W +
Sbjct: 124 MDQIYGSGKVID-TDGSK--LSLDPHLYKILSNSRDYERLKFVWKGWRD 169



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +1

Query: 274 RASLAEWEYTSNITKENEEKSIQTHLELSRQEKAAWEETKMYGWQDFQDFTLRRM 438
           ++S A W Y +N+T EN  K  Q  L  S   + A ++ K +      + T R++
Sbjct: 45  KSSEASWNYATNLTVENLNKRTQASLTYSAFLEEARKKAKKFDLTKLSNDTRRQI 99


>SB_49475| Best HMM Match : Syntaxin (HMM E-Value=8.5)
          Length = 200

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +3

Query: 510 SGMESNYATAKICSYKNESKCDLSLEPEITEIFSTSQDPEELKHAWVEWHN 662
           S M+  Y++ K+     E    LSL P++ +I + S+D E L   W  W +
Sbjct: 123 SQMDKIYSSGKVKDANGEM---LSLNPDLYKILAESRDYERLLFVWKGWRD 170


>SB_48511| Best HMM Match : Ank (HMM E-Value=4.6e-20)
          Length = 753

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 21/73 (28%), Positives = 38/73 (52%)
 Frame = +1

Query: 244 SGQRTGLRKNRASLAEWEYTSNITKENEEKSIQTHLELSRQEKAAWEETKMYGWQDFQDF 423
           S +R+G ++  +S       S  T + EE++     +L  ++K A ++TK   W+DF D 
Sbjct: 636 SSRRSGSQRGNSS----RIASARTVQEEERAKVHQAKLQLKQKLA-QDTKKRVWKDFDD- 689

Query: 424 TLRRMFKKYSQLG 462
            L + F K+  +G
Sbjct: 690 -LLKGFSKFLNVG 701


>SB_27384| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1032

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = -2

Query: 560 ILVRADLRSGVVRFHSRSVLIKAWNLSSGRAATPS*LYFLNILRNVKSWKSCHPYILVSS 381
           ++V+  LRS V R     V++  W L    A+TPS +YF N  R+ +  +    Y + S+
Sbjct: 133 VVVKHPLRSRVRRLSVARVVVGIWCLGLV-ASTPSTIYFTNQHRSHREQRMLSCYQVTSA 191

Query: 380 Q 378
           +
Sbjct: 192 E 192


>SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24)
          Length = 429

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 546 CSYKNESKCDLSLEPEITEIFSTSQD 623
           CS K+ S CDL  +P+ + +  TSQ+
Sbjct: 179 CSDKDTSACDLRTKPQSSTVCGTSQE 204


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,297,066
Number of Sequences: 59808
Number of extensions: 370601
Number of successful extensions: 1080
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)