Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20357
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88165-10|AAK21395.1|  161|Caenorhabditis elegans Paralysed arre...    30   1.4  
D45896-1|BAA82524.1|  161|Caenorhabditis elegans troponin C prot...    30   1.4  
D45895-1|BAA82523.1|  161|Caenorhabditis elegans troponin C prot...    30   1.4  
U58732-7|AAB00597.1|  345|Caenorhabditis elegans Taf (tbp-associ...    29   3.3  
Z81116-14|CAB03310.2|  335|Caenorhabditis elegans Hypothetical p...    28   5.8  
Z81100-6|CAB03195.2|  335|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z68106-5|CAA92129.1|  557|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>U88165-10|AAK21395.1|  161|Caenorhabditis elegans Paralysed arrest
           at two-fold protein10 protein.
          Length = 161

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +1

Query: 394 MYGW-QDFQDFTLRRMFKKYSQLGVAALPDDKFQALMRT 507
           M+G  QDF + TLR++ +K+   G   L  D+F AL+ T
Sbjct: 44  MHGMEQDFDEKTLRKLIRKFDADGSGKLEFDEFCALVYT 82


>D45896-1|BAA82524.1|  161|Caenorhabditis elegans troponin C
           protein.
          Length = 161

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +1

Query: 394 MYGW-QDFQDFTLRRMFKKYSQLGVAALPDDKFQALMRT 507
           M+G  QDF + TLR++ +K+   G   L  D+F AL+ T
Sbjct: 44  MHGMEQDFDEKTLRKLIRKFDADGSGKLEFDEFCALVYT 82


>D45895-1|BAA82523.1|  161|Caenorhabditis elegans troponin C
           protein.
          Length = 161

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +1

Query: 394 MYGW-QDFQDFTLRRMFKKYSQLGVAALPDDKFQALMRT 507
           M+G  QDF + TLR++ +K+   G   L  D+F AL+ T
Sbjct: 44  MHGMEQDFDEKTLRKLIRKFDADGSGKLEFDEFCALVYT 82


>U58732-7|AAB00597.1|  345|Caenorhabditis elegans Taf
           (tbp-associated transcriptionfactor) family protein 11.1
           protein.
          Length = 345

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 316 KENEEKSIQTHLELSRQEKAAWEETKMYGWQDFQDFTLRRMFKKYS 453
           +ENE   ++T + LS   +   E  + Y    FQ  T+RR+  +Y+
Sbjct: 227 EENELSRLKTQVLLSNFSQEQLERYESYRRSSFQKSTIRRLISQYT 272


>Z81116-14|CAB03310.2|  335|Caenorhabditis elegans Hypothetical
           protein K08G2.8 protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 415 QDFTLRRMFKKYSQLGVAALPDDKFQALMRTDREWNR 525
           Q+  ++++FKKY +     +P   F  +   DR W +
Sbjct: 159 QEIAIKKLFKKYPRFYNFEIPVSSFIVISDEDRSWQK 195


>Z81100-6|CAB03195.2|  335|Caenorhabditis elegans Hypothetical
           protein K08G2.8 protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 415 QDFTLRRMFKKYSQLGVAALPDDKFQALMRTDREWNR 525
           Q+  ++++FKKY +     +P   F  +   DR W +
Sbjct: 159 QEIAIKKLFKKYPRFYNFEIPVSSFIVISDEDRSWQK 195


>Z68106-5|CAA92129.1|  557|Caenorhabditis elegans Hypothetical
           protein F41E7.6 protein.
          Length = 557

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +1

Query: 337 IQTHLELSRQEKAAWEETKMYGWQDFQDFTLRRMFKKYSQLGVAALPDDKFQALMRTDRE 516
           + ++  L RQEK    +++   W   QD+ L      ++   V ALP D+ +   RT+ E
Sbjct: 119 LMSYWSLIRQEKIEVTKSRGNSWDMNQDYNL------FNACRVPALPKDRIKRYFRTEAE 172


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,829,625
Number of Sequences: 27780
Number of extensions: 280148
Number of successful extensions: 872
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)