Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20355
         (645 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1; ...    50   6e-05
UniRef50_UPI000051E3BB Cluster: poly(A)-binding protein-dependen...    35   1.9  
UniRef50_A2QME0 Cluster: Title: questionable ORF; n=1; Aspergill...    33   4.5  
UniRef50_Q89IA6 Cluster: Nitrate ABC transporter permease protei...    33   7.8  

>UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 77

 Score = 49.6 bits (113), Expect = 6e-05
 Identities = 23/28 (82%), Positives = 23/28 (82%)
 Frame = +3

Query: 555 PTSRNKRPKLLYKITLKQTKGIRSTGDT 638
           P S NKRPK LYKI LKQTKGIR TGDT
Sbjct: 31  PQSINKRPKHLYKINLKQTKGIRQTGDT 58


>UniRef50_UPI000051E3BB Cluster: poly(A)-binding protein-dependent
           poly(A) ribonuclease, putative; n=2;
           Eurotiomycetidae|Rep: poly(A)-binding protein-dependent
           poly(A) ribonuclease, putative - Aspergillus fumigatus
           Af293
          Length = 466

 Score = 34.7 bits (76), Expect = 1.9
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = -2

Query: 371 CDVVIVITTHDL*YGTNDLMRVCDALLLAAQELIRKLITRCKMYPYAI 228
           C ++ V+TT  L +G N +  +C +L+  A+   RK   RCK  P AI
Sbjct: 86  CTLLSVLTTRTL-WGINAMSMICSSLMTFARSCRRKRQPRCKHCPKAI 132


>UniRef50_A2QME0 Cluster: Title: questionable ORF; n=1; Aspergillus
           niger|Rep: Title: questionable ORF - Aspergillus niger
          Length = 116

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +2

Query: 323 SYHIISHELLSLSQHHNKGRPGQVF*GHMYLLHVTQCRNLASVY*YLPEKSTHMI 487
           S HI  H L+  S   +  RP  +   H+ LL V++C ++ S+    P K  H++
Sbjct: 9   SQHIAGHGLIIYSIAKHSTRPMHLMGEHIQLLTVSECASVGSLDMAQPHKRVHLV 63


>UniRef50_Q89IA6 Cluster: Nitrate ABC transporter permease protein;
           n=23; Bacteria|Rep: Nitrate ABC transporter permease
           protein - Bradyrhizobium japonicum
          Length = 335

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -1

Query: 297 LAVGGTGIDSKINNSMQNVSVCYIIIMCALVRITSSILFQII 172
           + VGGTGI   + N   N+S+  +II   L+ I   +L QI+
Sbjct: 283 MLVGGTGIGYFVWNEWNNLSITNVIIAILLIGIVGMLLDQIL 324


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 543,600,097
Number of Sequences: 1657284
Number of extensions: 9631444
Number of successful extensions: 17577
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17576
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48541014171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)