Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20355
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyc...    26   4.0  
SPAC56E4.07 |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    25   7.1  
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    25   9.3  

>SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -2

Query: 281 QELIRKLITRCKMYPYAIL 225
           +E+  K+++R +MYPY +L
Sbjct: 143 KEIYEKMLSRARMYPYFVL 161


>SPAC56E4.07 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 187 YTACYTNKRAHYNNIAYGYILHR 255
           Y A    KR HYN + YG  L++
Sbjct: 115 YGAQIVQKRFHYNELQYGAALYK 137


>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = +3

Query: 348 CYHYHNITTKGGLDRSSKVICIFCTLRN 431
           C+H++ + + G      + +C+FC   N
Sbjct: 204 CFHHNGLASYGEKASDVRYVCLFCKAWN 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,329,978
Number of Sequences: 5004
Number of extensions: 42875
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)