Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20355
         (645 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0894 + 29160537-29160628,29161368-29162198,29162356-291626...    29   4.2  
08_02_0297 + 15469370-15469834,15470644-15470696,15471058-154711...    27   9.7  

>04_04_0894 +
           29160537-29160628,29161368-29162198,29162356-29162615,
           29163064-29163164,29163261-29163353,29163926-29164033,
           29165074-29165301,29165733-29165837
          Length = 605

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -3

Query: 463 EVLVNRSKIATLRNVQKIHMTLEDLSRPPFV 371
           +V+VNRS+     NV KI + +ED+ + P +
Sbjct: 495 QVIVNRSRAKWRSNVTKIPIRIEDIEKVPAI 525


>08_02_0297 +
           15469370-15469834,15470644-15470696,15471058-15471149,
           15471515-15471598,15471782-15471876,15474036-15474345,
           15474465-15474549,15474802-15474955,15475200-15475541
          Length = 559

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = -3

Query: 613 FVCFKVILYKSLGLLFLEVGHY--ESLPGQLVLNKTRF*ILSLINHMS*LFREVLVNRSK 440
           F CFK+I   + GLL+L  G+   E L G ++  K       +I     L   +   RS 
Sbjct: 377 FSCFKIIQGIAEGLLYLHTGYIAPEYLRGGILSTKVDVYAYGVI-----LLEIITGRRSC 431

Query: 439 IATLRNVQKIHMT 401
           I  L++ + +H+T
Sbjct: 432 IPCLKDDEYVHLT 444


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,115,333
Number of Sequences: 37544
Number of extensions: 250825
Number of successful extensions: 437
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)