Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20355
         (645 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57599| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_19791| Best HMM Match : Reprolysin (HMM E-Value=3.1)                28   7.5  
SB_35692| Best HMM Match : LicD (HMM E-Value=4.3e-08)                  27   9.9  
SB_18647| Best HMM Match : SH2 (HMM E-Value=7.3e-16)                   27   9.9  
SB_14338| Best HMM Match : Spore_permease (HMM E-Value=0.75)           27   9.9  

>SB_57599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 651

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +3

Query: 384 LDRSSKVICIFCTLRNVAILLRFTNTSLK 470
           L  SSK+  +F  + N+A L RF N SLK
Sbjct: 325 LVHSSKIPMVFSMMENLAALGRFFNNSLK 353


>SB_19791| Best HMM Match : Reprolysin (HMM E-Value=3.1)
          Length = 616

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 278 PVPPTARRRILA*GHSYHIISHELLSLSQHH 370
           PVP   RR++   GH +H+IS   L   + H
Sbjct: 47  PVPHHIRRKMDLEGHGHHVISRRSLRSKRSH 77


>SB_35692| Best HMM Match : LicD (HMM E-Value=4.3e-08)
          Length = 549

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -3

Query: 244 CIRMLYYYNVRACSYNKQYIVSDYPIEVKNSVLQ 143
           C R    +  + CS++   +V  YP++V+N V +
Sbjct: 168 CYRWCLTFEHKHCSWHDGLMVDIYPVKVRNGVFE 201


>SB_18647| Best HMM Match : SH2 (HMM E-Value=7.3e-16)
          Length = 720

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 485 SYELTFQGGISKPKQDCDIA*RAEDTYDLRRPVQASL 375
           SY L  QG +SK KQ  D+      +YD+R   + SL
Sbjct: 216 SYALIRQGLVSKTKQKADMFSACHFSYDIRYSEKISL 252


>SB_14338| Best HMM Match : Spore_permease (HMM E-Value=0.75)
          Length = 367

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = -1

Query: 252 MQNVSVCY--IIIMCALVRITSSILFQII 172
           + NVSVC   III+C L +++ SIL  II
Sbjct: 63  LTNVSVCILSIIIVCRLTKVSVSILSIII 91


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,324,596
Number of Sequences: 59808
Number of extensions: 324959
Number of successful extensions: 602
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)