Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20355
         (645 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23521-9|AAC46809.2|  499|Caenorhabditis elegans Hypothetical pr...    29   2.8  
D86473-1|BAA20377.1|  412|Caenorhabditis elegans 3-keto-acyl-CoA...    27   8.6  
AL023847-7|CAA19548.1|  412|Caenorhabditis elegans Hypothetical ...    27   8.6  

>U23521-9|AAC46809.2|  499|Caenorhabditis elegans Hypothetical
           protein F41C3.2 protein.
          Length = 499

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 24/92 (26%), Positives = 37/92 (40%)
 Frame = +1

Query: 184 QYTACYTNKRAHYNNIAYGYILHRVINFRINSCAANSKASHTRIRSFVPYHKS*VVITIT 363
           QY   Y NK  HYN    G+     + + I SC A   A            +   ++T T
Sbjct: 298 QYGPTYLNKVLHYNLSTTGWT--AAVPY-IFSCIARIVAQPLSANCSFLGERLAAIVTTT 354

Query: 364 TSQQREAWTGLLRSYVSSARYAMSQSCFGLLI 459
            SQ   A   L+  ++     ++ Q C+ L+I
Sbjct: 355 ISQGTMAICFLVLMFIPQTWSSVGQLCYSLVI 386


>D86473-1|BAA20377.1|  412|Caenorhabditis elegans 3-keto-acyl-CoA
           thiolase protein.
          Length = 412

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 181 KQYTACYTNKRAHYNNIAYGYILHRVIN 264
           K++   Y +KR HY  IAY   LH V N
Sbjct: 164 KEHMEKYGSKREHYAKIAYKNHLHSVHN 191


>AL023847-7|CAA19548.1|  412|Caenorhabditis elegans Hypothetical
           protein Y57A10C.6 protein.
          Length = 412

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 181 KQYTACYTNKRAHYNNIAYGYILHRVIN 264
           K++   Y +KR HY  IAY   LH V N
Sbjct: 164 KEHMEKYGSKREHYAKIAYKNHLHSVHN 191


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,890,871
Number of Sequences: 27780
Number of extensions: 239917
Number of successful extensions: 419
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)