Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20355
         (645 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51000.1 68418.m06323 F-box family protein contains F-box dom...    27   8.1  
At5g45840.1 68418.m05639 leucine-rich repeat transmembrane prote...    27   8.1  

>At5g51000.1 68418.m06323 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 378

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -1

Query: 390 CPGLPLL*CCDSDNNS*LMIWYE*PYASMRR 298
           C GL LL  C+  +NS LM+W   PY    R
Sbjct: 100 CDGLLLLLLCNPKDNSKLMVWN--PYLGQTR 128


>At5g45840.1 68418.m05639 leucine-rich repeat transmembrane protein
           kinase, putative  and genscan+
          Length = 668

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 244 CIRMLYYYNVRACSYNKQYIVSDYPIEVKNSVLQR 140
           C+     Y VR  S+ K Y+V+ +P E + S+ +R
Sbjct: 193 CVNRKLGYWVRRESHGKNYVVNYHPSENETSIFKR 227


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,739,799
Number of Sequences: 28952
Number of extensions: 211174
Number of successful extensions: 391
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)