Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20351
         (709 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    32   0.005
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    24   1.1  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    24   1.1  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   1.8  
AF264718-1|AAF75271.1|  125|Tribolium castaneum putative cytochr...    23   3.2  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    23   3.2  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    23   3.2  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    23   3.2  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.3  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    22   4.3  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     22   5.6  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   9.8  
AF260822-1|AAG02020.1|  138|Tribolium castaneum alpha-esterase l...    21   9.8  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   9.8  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 31.9 bits (69), Expect = 0.005
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 368 PSRQPPTAESGLGGSVAATGVPALVQARGHIIEKIP 475
           P    P+  SGLGG ++   +PAL    GH +E +P
Sbjct: 76  PYAPHPSLSSGLGGGLSGMPMPALGFGLGHPLESVP 111


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 388 SGERPWRQRCCYRRPSARSG*RTH 459
           SGE+P+R   C RR S  S   TH
Sbjct: 45  SGEKPFRCPVCDRRFSQSSSVTTH 68



 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 367 TVASTSDSGERPWRQRCC 420
           T    + SGERP+R R C
Sbjct: 66  TTHMRTHSGERPYRCRLC 83


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 388 SGERPWRQRCCYRRPSARSG*RTH 459
           SGE+P+R   C RR S  S   TH
Sbjct: 301 SGEKPFRCPVCDRRFSQSSSVTTH 324



 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 367 TVASTSDSGERPWRQRCC 420
           T    + SGERP+R R C
Sbjct: 322 TTHMRTHSGERPYRCRLC 339


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = +2

Query: 461 IEKIP--ELPLVVADKVQRSTRPNRLSSS*GASRHGLISLRC 580
           + KIP  E P   +     S  P   SS  G++   ++SL C
Sbjct: 211 VPKIPPAEFPTTSSSSALESPNPASRSSCLGSNTSSMLSLNC 252


>AF264718-1|AAF75271.1|  125|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q6 protein.
          Length = 125

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 462 LKRFPSFPWL*PTKSRDQQDQTGCHLPE 545
           L+ FPS P++    S D   +TG  +PE
Sbjct: 55  LRLFPSVPFISRYASEDFVTKTGNTIPE 82


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = +2

Query: 467 KIP--ELPLVVADKVQRSTRPNRLSSS*GASRHGLISLRC 580
           KIP  E P   +     S  P   SS  G++   ++SL C
Sbjct: 2   KIPPAEFPTTSSSSALESPNPASRSSCLGSNTSSMLSLNC 41


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = +2

Query: 467 KIP--ELPLVVADKVQRSTRPNRLSSS*GASRHGLISLRC 580
           KIP  E P   +     S  P   SS  G++   ++SL C
Sbjct: 2   KIPPAEFPTTSSSSALESPNPASRSSCLGSNTSSMLSLNC 41


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = +2

Query: 461 IEKIP--ELPLVVADKVQRSTRPNRLSSS*GASRHGLISLRC 580
           + KIP  E P   +     S  P   SS  G++   ++SL C
Sbjct: 211 VPKIPPAEFPTTSSSSALESPDPASRSSCLGSNTSSMLSLNC 252


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 190  CVSKEAGHQTSAESW 234
            C  K+ GH+ S  SW
Sbjct: 1152 CEEKKPGHKPSTSSW 1166


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 388 SGERPWRQRCCYRRPSARSG*RTH 459
           +GERP++ + C R  + +   +TH
Sbjct: 158 TGERPFKCKICGRAFTTKGNLKTH 181


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 91  HPAPSHSSLSTPTL 50
           HPA +HS+L +P +
Sbjct: 121 HPAAAHSALLSPAM 134


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/28 (25%), Positives = 14/28 (50%)
 Frame = -2

Query: 333 YVHHDTCYRRHPDRTYEYHHHGHAEFGD 250
           Y++H    + +      Y+H+G+   GD
Sbjct: 371 YINHQNYVQGYQGEHPNYNHYGYHYSGD 398


>AF260822-1|AAG02020.1|  138|Tribolium castaneum alpha-esterase like
           protein E3 protein.
          Length = 138

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 425 GVPALVQARGHIIEKIPELP 484
           G+P      GH+  K PELP
Sbjct: 3   GMPYAKPPLGHLRFKAPELP 22


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/28 (25%), Positives = 14/28 (50%)
 Frame = -2

Query: 333 YVHHDTCYRRHPDRTYEYHHHGHAEFGD 250
           Y++H    + +      Y+H+G+   GD
Sbjct: 319 YINHQNYVQGYQGEHPNYNHYGYHYSGD 346


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,028
Number of Sequences: 336
Number of extensions: 3130
Number of successful extensions: 20
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)