Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20351
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   105   6e-24
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   104   1e-23
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.0  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   4.6  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    25   8.0  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  105 bits (252), Expect = 6e-24
 Identities = 49/75 (65%), Positives = 59/75 (78%)
 Frame = +1

Query: 31  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 210
           ++ ARP VS+YS K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 211 HQTSAESWGTGRAVA 255
           HQTSAESWGTGRA+A
Sbjct: 60  HQTSAESWGTGRALA 74



 Score = 82.2 bits (194), Expect = 7e-17
 Identities = 33/38 (86%), Positives = 34/38 (89%)
 Frame = +3

Query: 255 RIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 368
           RIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 75  RIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWH 112



 Score = 77.0 bits (181), Expect = 2e-15
 Identities = 31/54 (57%), Positives = 46/54 (85%)
 Frame = +1

Query: 517 KTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKGSG 678
           KTK+AV  L+ +KA+ D++KV  S++LRAGKGK+RNRR +QR+GPL++FN+ +G
Sbjct: 163 KTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDAG 216



 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 23/36 (63%), Positives = 30/36 (83%)
 Frame = +2

Query: 401 LGGSVAATGVPALVQARGHIIEKIPELPLVVADKVQ 508
           +  +VAA+GVP+L+ ARGH IE+IPE+PLVV D VQ
Sbjct: 124 ISSAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQ 159


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  104 bits (250), Expect = 1e-23
 Identities = 48/75 (64%), Positives = 59/75 (78%)
 Frame = +1

Query: 31  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 210
           ++ ARP VS+Y+ K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 211 HQTSAESWGTGRAVA 255
           HQTSAESWGTGRA+A
Sbjct: 60  HQTSAESWGTGRALA 74



 Score = 82.2 bits (194), Expect = 7e-17
 Identities = 33/38 (86%), Positives = 34/38 (89%)
 Frame = +3

Query: 255 RIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 368
           RIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 75  RIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWH 112



 Score = 77.4 bits (182), Expect = 2e-15
 Identities = 31/54 (57%), Positives = 46/54 (85%)
 Frame = +1

Query: 517 KTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKGSG 678
           KTK+AV  L+ +KA+ D++KV  S++LRAGKGK+RNRR +QR+GPL++FN+ +G
Sbjct: 163 KTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDTG 216



 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 23/36 (63%), Positives = 30/36 (83%)
 Frame = +2

Query: 401 LGGSVAATGVPALVQARGHIIEKIPELPLVVADKVQ 508
           +  +VAA+GVP+L+ ARGH IE+IPE+PLVV D VQ
Sbjct: 124 IASAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQ 159


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
 Frame = +2

Query: 332  YVRPHEALAALAPSRQPPTAESGLGGSVAATGVPALVQARGH-IIEKIPELPL 487
            +  PH  L + AP  QP   E     +V     P+    +GH  I  +   PL
Sbjct: 854  FYEPHSYLESPAPEPQPSYEEESFNATVIHAPTPSTATFQGHPTISNVATPPL 906


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 92  APCTVSLFSEYTDTKGRATDRLISLL 15
           A C V ++SEYT   G ++  L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 30  SIGSPTFSVGVLREE*DGAGCSQAPPVRVQGAHPSGP 140
           SI SP+ SVG + +  D +  S + P+ + G     P
Sbjct: 312 SITSPSSSVGQIPQPTDHSALSPSKPMSISGTESPNP 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,659,673
Number of Sequences: 5004
Number of extensions: 50772
Number of successful extensions: 148
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)