Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20351
(709 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 86 2e-17
07_01_0578 + 4295386-4296489,4297394-4297507 86 3e-17
02_03_0279 + 17250347-17252098 30 1.6
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 29 2.7
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61... 29 4.8
11_01_0388 + 2933006-2934173,2934312-2934371,2934877-2935067 29 4.8
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 28 8.4
05_04_0292 + 19893895-19894983 28 8.4
05_03_0419 - 13707843-13707860,13707936-13708010,13708251-137082... 28 8.4
02_04_0253 + 21310082-21310094,21310606-21311135 28 8.4
02_04_0249 + 21283004-21283016,21283526-21284055 28 8.4
02_04_0247 + 21273978-21273990,21274500-21275029 28 8.4
02_04_0245 + 21262645-21262754,21262851-21262997,21263100-212631... 28 8.4
01_01_0660 + 5029070-5029177,5029303-5029398,5029494-5029556,502... 28 8.4
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 86.2 bits (204), Expect = 2e-17
Identities = 35/38 (92%), Positives = 36/38 (94%)
Frame = +3
Query: 255 RIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 368
RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 78 RIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWH 115
Score = 85.4 bits (202), Expect = 4e-17
Identities = 43/75 (57%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Frame = +1
Query: 34 SVARPLVSVYS-EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 210
+ ARPLVSV + E A +P V +APIRPD+V H +S N RQPY VS+ AG
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAG 62
Query: 211 HQTSAESWGTGRAVA 255
HQTSAESWGTGRAV+
Sbjct: 63 HQTSAESWGTGRAVS 77
Score = 58.4 bits (135), Expect = 5e-09
Identities = 27/51 (52%), Positives = 37/51 (72%)
Frame = +1
Query: 511 INKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIF 663
I KT Q++ L+++ A++D K S +RAGKGKMRNRR I RKGPLI++
Sbjct: 164 IEKTAQSIKVLKQIGAYADAEKTKDSVAIRAGKGKMRNRRYINRKGPLIVY 214
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/36 (55%), Positives = 28/36 (77%)
Frame = +2
Query: 401 LGGSVAATGVPALVQARGHIIEKIPELPLVVADKVQ 508
+ ++AAT VP+LV ARGH IE +PE PLVV+D ++
Sbjct: 127 VASALAATAVPSLVLARGHRIEGVPEFPLVVSDSIE 162
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 85.8 bits (203), Expect = 3e-17
Identities = 34/38 (89%), Positives = 36/38 (94%)
Frame = +3
Query: 255 RIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 368
RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 79 RIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWH 116
Score = 83.4 bits (197), Expect = 2e-16
Identities = 42/73 (57%), Positives = 53/73 (72%), Gaps = 2/73 (2%)
Frame = +1
Query: 43 RPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 216
RPLVSV + + + T ++ L VF+AP+RPD+V VH +S N RQPY VS+ AGHQ
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQ 65
Query: 217 TSAESWGTGRAVA 255
TSAESWGTGRAV+
Sbjct: 66 TSAESWGTGRAVS 78
Score = 58.4 bits (135), Expect = 5e-09
Identities = 28/57 (49%), Positives = 38/57 (66%)
Frame = +1
Query: 493 SRQSPEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIF 663
S + I KT QA+ L+++ A++D K S +R GKGKMRNRR I RKGPLI++
Sbjct: 159 SDSAESIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGKGKMRNRRYINRKGPLIVY 215
Score = 47.6 bits (108), Expect = 1e-05
Identities = 20/36 (55%), Positives = 28/36 (77%)
Frame = +2
Query: 401 LGGSVAATGVPALVQARGHIIEKIPELPLVVADKVQ 508
+ ++AAT VP+LV ARGH IE +PELPLV++D +
Sbjct: 128 VASALAATSVPSLVLARGHRIETVPELPLVISDSAE 163
>02_03_0279 + 17250347-17252098
Length = 583
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = -2
Query: 324 HDTCYRRHPDRTYEYHHHGHAEFGDSTSSTP*FSTGLVTSLLAHAVGLPRVLGHRNVNII 145
H + +R H Y+YHHH H S +S+ + +V ++ A+ R G+ V +
Sbjct: 363 HGSNHRHHYH--YQYHHHHHHIIASSAASSAATAASVVRIMIREAIARLRDSGYGFVALA 420
Query: 144 DQVR 133
+V+
Sbjct: 421 MRVK 424
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +3
Query: 24 NESIGSPTFSVGVLREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 161
N + P+F V L G SQA V + GAH G Q C F
Sbjct: 131 NSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ-CQNF 175
>12_01_0073 +
613316-613447,613611-613802,614067-614232,614460-614845
Length = 291
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +3
Query: 24 NESIGSPTFSVGVLREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 161
N I +PTF +G L + G S + + GAH G + C F
Sbjct: 132 NNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>11_01_0388 + 2933006-2934173,2934312-2934371,2934877-2935067
Length = 472
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/46 (34%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Frame = -2
Query: 663 EDYEGSLTL--DTTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQEDD 532
ED +GS+ + DTT++ + +L++ ++L LV +K ++P L E+D
Sbjct: 236 EDCKGSVIVSCDTTSMYYKSLSTLQSLLLVCVKKLQPKLVVTIEED 281
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 348 SWGRTYVHHDTCYRRHPDRTYEYHH 274
SWGR H D RR P R+ +HH
Sbjct: 303 SWGRD--HADNRLRRSPSRSSNFHH 325
>05_04_0292 + 19893895-19894983
Length = 362
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 139 GPDGWAP*TRTGGAWLHPAPSHSSLSTPTLK 47
G D WAP GG LHP H++ S L+
Sbjct: 211 GADSWAPLRVAGGIPLHPGFVHATRSKSELE 241
>05_03_0419 -
13707843-13707860,13707936-13708010,13708251-13708286,
13709718-13709765,13710246-13710326,13710503-13710554,
13710671-13710730,13711266-13711346,13711461-13711577,
13711714-13711754,13711981-13712059,13712136-13712292,
13712586-13712718,13712799-13712926,13715152-13715314
Length = 422
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = -2
Query: 225 STGLVTSLLAHAVGLPRVLGHRNVNIIDQVRTD-GRLEHEREGLG 94
+TG+ +L+ + VG+P+VL ++ I Q+ D G +E +RE G
Sbjct: 204 ATGVYKTLVRYLVGVPQVL----LDFIRQINDDNGPMEEQRERYG 244
>02_04_0253 + 21310082-21310094,21310606-21311135
Length = 180
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 446 ARGHIIEKIPELPLVVADKVQR 511
AR +++EK+ ELP VAD V+R
Sbjct: 14 ARKYVLEKVDELPGEVADMVRR 35
>02_04_0249 + 21283004-21283016,21283526-21284055
Length = 180
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 446 ARGHIIEKIPELPLVVADKVQR 511
AR +++EK+ ELP VAD V+R
Sbjct: 14 ARKYVLEKVDELPGEVADMVRR 35
>02_04_0247 + 21273978-21273990,21274500-21275029
Length = 180
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 446 ARGHIIEKIPELPLVVADKVQR 511
AR +++EK+ ELP VAD V+R
Sbjct: 14 ARKYVLEKVDELPGEVADMVRR 35
>02_04_0245 +
21262645-21262754,21262851-21262997,21263100-21263156,
21263256-21263442,21264700-21264925,21265474-21266003
Length = 418
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 446 ARGHIIEKIPELPLVVADKVQR 511
AR +++EK+ ELP VAD V+R
Sbjct: 252 ARKYVLEKVDELPGEVADMVRR 273
>01_01_0660 +
5029070-5029177,5029303-5029398,5029494-5029556,
5029836-5029913,5030446-5030614,5030797-5031180,
5031959-5032042,5032143-5032288,5032810-5033070,
5033147-5033328,5033421-5033586,5033650-5033703,
5034702-5034965,5035088-5035303,5035388-5035540,
5035630-5035827
Length = 873
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = +2
Query: 362 LAPSRQPPTAESGLGGSVAATGVPALVQARGHIIEKIPELPLVVADKVQRSTRPNRLSSS 541
L RQ E L + G L ++ +I KIP+LP + ++ S R R S S
Sbjct: 389 LPEERQVDATECALNSDLER-GTVDLPESTANISTKIPDLPSQLKPEINMSRRSKRKSKS 447
Query: 542 *GASRH 559
S++
Sbjct: 448 PCGSKY 453
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,897,000
Number of Sequences: 37544
Number of extensions: 443978
Number of successful extensions: 1716
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1710
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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