Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20351
         (709 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)               100   2e-21
SB_5942| Best HMM Match : Sec7 (HMM E-Value=3.1e-09)                   31   0.69 
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)                     28   6.5  
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)            28   6.5  
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)                    28   6.5  
SB_8252| Best HMM Match : rve (HMM E-Value=0.13)                       28   6.5  
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)                 28   8.5  
SB_14955| Best HMM Match : CTP_transf_3 (HMM E-Value=8)                28   8.5  
SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)           28   8.5  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score = 99.5 bits (237), Expect = 2e-21
 Identities = 47/72 (65%), Positives = 57/72 (79%)
 Frame = +1

Query: 40  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 219
           ARP+++V++E  E+       LP VFKAPIRPDLVN VH +++KN RQPY V+K AGHQT
Sbjct: 2   ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQT 59

Query: 220 SAESWGTGRAVA 255
           SAESWGTGRAVA
Sbjct: 60  SAESWGTGRAVA 71



 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 36/38 (94%), Positives = 37/38 (97%)
 Frame = +3

Query: 255 RIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 368
           RIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 72  RIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWH 109



 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 29/56 (51%), Positives = 39/56 (69%)
 Frame = +1

Query: 511 INKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKGSG 678
           + KT  AV  L+ + A+ D+ K   S+++RAGKGKMRNRR + RKGPLII+N   G
Sbjct: 158 VTKTSAAVKLLKAVNAYEDVEKCIDSKKIRAGKGKMRNRRTVMRKGPLIIYNNDQG 213



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 31/100 (31%), Positives = 47/100 (47%)
 Frame = +2

Query: 410 SVAATGVPALVQARGHIIEKIPELPLVVADKVQRSTRPNRLSSS*GASRHGLISLRCTSL 589
           ++AA+ +PAL+ ARGH IEKI E+PLV++D ++  T+ +       A        +C   
Sbjct: 124 ALAASALPALIMARGHRIEKIAEVPLVISDAIESVTKTSAAVKLLKAVNAYEDVEKCIDS 183

Query: 590 SVFVLVRVKCAXXXXXXXXXXXXXXXXXQGLTRAFRNIPG 709
                 + K                   QGL +AFRN+PG
Sbjct: 184 KKIRAGKGKMRNRRTVMRKGPLIIYNNDQGLRQAFRNLPG 223


>SB_5942| Best HMM Match : Sec7 (HMM E-Value=3.1e-09)
          Length = 304

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -2

Query: 333 YVHHDTCYRRHPDRTYEYHHHGHAEFGDSTSSTP*FSTGLVTSLL 199
           Y HH   +  H    + +HHH H     +T +T    T ++T+++
Sbjct: 158 YYHHHLLHHHHHHWHHHHHHHRHHHHSFTTIATTTVITTIITTVI 202


>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -2

Query: 336 TYVHHDTCYRRHPDRTYEYHHHGHAE-FGDST 244
           TY H DT  R+HPD     H   HA   G+S+
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHANVVGESS 154


>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
          Length = 193

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 327 HHDTCYRRHPDRTYEYHHH 271
           HH   YR H  + Y +HHH
Sbjct: 96  HHHQHYRHHRHQHYRHHHH 114


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 107  GRGLAAPCTVSLFSEYTDTKGRATDRLI 24
            G+GL   C+V+L S Y  T+G+   RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190


>SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)
          Length = 715

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +1

Query: 130 RPDLVNDVHVSMSKNSRQPYC-VSKEAGHQTSAESWGTGRAV 252
           RP       +SM K  R+PY  + +E GH+    S  T R V
Sbjct: 156 RPGCDTHEKISMEKRKREPYLELIRETGHERQRRSVSTERNV 197


>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2325

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 136  DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVAE 258
            D+ NDV ++++  +  PY +     H T  E   TG+ +A+
Sbjct: 2034 DVTNDVTINVTDVNEAPYDIRLVPSHVTVKEDIRTGQCIAQ 2074


>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
          Length = 264

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 333 YVHHDTCYRRHPDRTYEYHHHGH 265
           Y HH   +RR   R + +HHH H
Sbjct: 233 YHHHHHHHRRRRRRRHHHHHHHH 255


>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
          Length = 839

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 327 HHDTCYRRHPDRTYEYHHH 271
           HH   + RH  R + YHHH
Sbjct: 570 HHHLHHHRHHHRHHHYHHH 588


>SB_14955| Best HMM Match : CTP_transf_3 (HMM E-Value=8)
          Length = 437

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = -2

Query: 345 WGRTYVHHDTCYRRHPDRTYEYHHHGHAEFGDSTSSTP 232
           W +   H  +      DR  EY   G  + GDS +S P
Sbjct: 221 WVQHRKHDSSICNDQSDRDIEYEGQGEVDMGDSVTSLP 258


>SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)
          Length = 1779

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 327 HHDTCYRRHPDRTYEYHHHGH 265
           HH   + RH DR + + HH H
Sbjct: 340 HHRNKHYRHHDRNHHHRHHHH 360


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,240,557
Number of Sequences: 59808
Number of extensions: 437735
Number of successful extensions: 1471
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1436
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)