Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20351
         (709 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...    82   3e-16
AC006749-2|AAF60533.3|  731|Caenorhabditis elegans Hypothetical ...    31   0.81 
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    29   4.3  
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    28   7.5  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 41/72 (56%), Positives = 51/72 (70%)
 Frame = +1

Query: 40  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 219
           ARPLV+VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG Q 
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQH 61

Query: 220 SAESWGTGRAVA 255
           SAESWGTGRAVA
Sbjct: 62  SAESWGTGRAVA 73



 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 34/38 (89%), Positives = 35/38 (92%)
 Frame = +3

Query: 255 RIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 368
           RIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH
Sbjct: 74  RIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWH 111



 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 30/51 (58%), Positives = 41/51 (80%)
 Frame = +1

Query: 517 KTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNK 669
           KTK+AV+FLRR   W+DI KVY S+R RAGKGK+RNR+  Q+ GP++I+ +
Sbjct: 162 KTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQKLGPVVIYGQ 212



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 20/36 (55%), Positives = 33/36 (91%)
 Frame = +2

Query: 401 LGGSVAATGVPALVQARGHIIEKIPELPLVVADKVQ 508
           +  ++AA+G+PAL+QARGH+I+++ E+PLVV+DKV+
Sbjct: 123 VSSAIAASGIPALLQARGHVIDQVAEVPLVVSDKVE 158


>AC006749-2|AAF60533.3|  731|Caenorhabditis elegans Hypothetical
           protein Y39D8B.3 protein.
          Length = 731

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +1

Query: 553 KAWSDILKVYKSQRLRAGKGKMRNRRRIQRK-GPLIIFNKGSG 678
           K W D+++  K++  R  KGK +N+ R++RK    I   KG+G
Sbjct: 232 KRWQDVIQEIKNESTRI-KGKSQNKERMKRKFSKFIRTMKGTG 273


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 333 YVHHDTCYRRHPDRTYEYHHHGHAEFGDSTSST 235
           + HH   +  HP     +HHH H +  DS+SS+
Sbjct: 81  HTHH--AHGAHPGHHEVHHHHHHVKAQDSSSSS 111


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 327 HHDTCYRRHPDRTYEYHHHGH 265
           HHD  +++H  + ++ HHHGH
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,190,518
Number of Sequences: 27780
Number of extensions: 308917
Number of successful extensions: 992
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)