Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20351
(709 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 95 3e-20
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 93 1e-19
At2g33590.1 68415.m04117 cinnamoyl-CoA reductase family similar ... 31 0.75
At1g02065.2 68414.m00127 squamosa promoter-binding protein-like ... 30 1.7
At1g02065.1 68414.m00128 squamosa promoter-binding protein-like ... 30 1.7
At3g18640.1 68416.m02368 zinc finger protein-related contains si... 29 2.3
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy... 29 2.3
At4g39480.1 68417.m05585 cytochrome P450 family protein contains... 28 5.3
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr... 28 7.0
At5g01010.1 68418.m00001 expressed protein 28 7.0
At3g60300.1 68416.m06740 RWD domain-containing protein contains ... 28 7.0
At3g25840.1 68416.m03219 protein kinase family protein contains ... 28 7.0
At5g40370.1 68418.m04897 glutaredoxin, putative similar to gluta... 27 9.2
At4g11230.1 68417.m01819 respiratory burst oxidase, putative / N... 27 9.2
At1g10410.1 68414.m01173 expressed protein similar to ESTs gb|N9... 27 9.2
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 95.5 bits (227), Expect = 3e-20
Identities = 46/79 (58%), Positives = 58/79 (73%), Gaps = 2/79 (2%)
Frame = +1
Query: 25 MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 198
M+ + ARPLV++ + + T Q + LP V AP+RPD+VN VH +S NSRQPY VS
Sbjct: 1 MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60
Query: 199 KEAGHQTSAESWGTGRAVA 255
K+AGHQTSAESWGTGRAV+
Sbjct: 61 KKAGHQTSAESWGTGRAVS 79
Score = 83.8 bits (198), Expect = 1e-16
Identities = 34/38 (89%), Positives = 35/38 (92%)
Frame = +3
Query: 255 RIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 368
RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH
Sbjct: 80 RIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWH 117
Score = 54.4 bits (125), Expect = 7e-08
Identities = 25/57 (43%), Positives = 36/57 (63%)
Frame = +1
Query: 493 SRQSPEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIF 663
S + + KT A+ L+++ A+ D K S +R GKGKMRNRR I RKGPL+++
Sbjct: 160 SDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVY 216
Score = 50.0 bits (114), Expect = 2e-06
Identities = 21/33 (63%), Positives = 27/33 (81%)
Frame = +2
Query: 410 SVAATGVPALVQARGHIIEKIPELPLVVADKVQ 508
++AAT VPALV ARGH IE +PE+PLVV+D +
Sbjct: 132 AIAATAVPALVMARGHKIENVPEMPLVVSDSAE 164
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 93.5 bits (222), Expect = 1e-19
Identities = 46/76 (60%), Positives = 54/76 (71%), Gaps = 2/76 (2%)
Frame = +1
Query: 34 SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 207
+ ARPLV+V + T Q LP V AP+RPD+VN VH +S NSRQPY VSK+A
Sbjct: 5 AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKA 64
Query: 208 GHQTSAESWGTGRAVA 255
GHQTSAESWGTGRAV+
Sbjct: 65 GHQTSAESWGTGRAVS 80
Score = 83.8 bits (198), Expect = 1e-16
Identities = 34/38 (89%), Positives = 35/38 (92%)
Frame = +3
Query: 255 RIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 368
RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH
Sbjct: 81 RIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWH 118
Score = 55.6 bits (128), Expect = 3e-08
Identities = 26/57 (45%), Positives = 36/57 (63%)
Frame = +1
Query: 493 SRQSPEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIF 663
S + + KT A+ L+++ A+ D K S +R GKGKMRNRR I RKGPL++F
Sbjct: 161 SDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVF 217
Score = 50.0 bits (114), Expect = 2e-06
Identities = 21/33 (63%), Positives = 27/33 (81%)
Frame = +2
Query: 410 SVAATGVPALVQARGHIIEKIPELPLVVADKVQ 508
++AAT VPALV ARGH IE +PE+PLVV+D +
Sbjct: 133 AIAATAVPALVMARGHKIENVPEMPLVVSDSAE 165
>At2g33590.1 68415.m04117 cinnamoyl-CoA reductase family similar to
cinnamoyl-CoA reductase from Pinus taeda [GI:17978649],
Eucalyptus gunnii [GI:2058311]
Length = 321
Score = 31.1 bits (67), Expect = 0.75
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Frame = -2
Query: 645 LTLDTTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQEDDSLF--GLVDLWTLSATTRGSSG 472
L L H T+ + HLK LE + LF L+D +L + G SG
Sbjct: 25 LLLSKDYFVHGTVRDPDNEKYAHLKK----LEKAGDKLKLFKADLLDYGSLQSAIAGCSG 80
Query: 471 IFSIMCPLA*TSAGTPVAATLPP 403
+F + CP+ S P + P
Sbjct: 81 VFHVACPVPPASVPNPEVELIAP 103
>At1g02065.2 68414.m00127 squamosa promoter-binding protein-like 8
(SPL8) identical to squamosa promoter binding
protein-like 8 [Arabidopsis thaliana] GI:5931679;
contains Pfam profile PF03110: SBP domain
Length = 246
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = -2
Query: 327 HHDTCYRR--HPDRTYEYHHHGHAEFGDSTSSTP 232
HH T Y + ++ +HHH H+ +G +T++TP
Sbjct: 63 HHLTLYGQTNSNNQFLHHHHHHHSLYGSTTTTTP 96
>At1g02065.1 68414.m00128 squamosa promoter-binding protein-like 8
(SPL8) identical to squamosa promoter binding
protein-like 8 [Arabidopsis thaliana] GI:5931679;
contains Pfam profile PF03110: SBP domain
Length = 333
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = -2
Query: 327 HHDTCYRR--HPDRTYEYHHHGHAEFGDSTSSTP 232
HH T Y + ++ +HHH H+ +G +T++TP
Sbjct: 63 HHLTLYGQTNSNNQFLHHHHHHHSLYGSTTTTTP 96
>At3g18640.1 68416.m02368 zinc finger protein-related contains
similarity to zinc finger proteins (CCCH type)
Length = 676
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +2
Query: 335 VRPHEALAALAPSRQPPTAESGLGGSVAATGVPALVQARGHIIEKIPELPL 487
V+P++A P GLG S A GVPA+ ++ +E+I E+ L
Sbjct: 488 VQPNQATTQSNVVSSNPNQLWGLGMSTGAEGVPAVTASKISNVEEIQEVSL 538
>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
cytochrome P450 GI:4688670 from [Catharanthus roseus]
Length = 497
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +1
Query: 49 LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 195
LV +++ SE+++ PLPF K+P +PD++ H + NS+ C+
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397
>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
Pfam profile: PF00067 cytochrome P450
Length = 989
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 100 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 195
P+PF K+P +PD++ H + NSR +C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 100 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 195
P+PF K+P +PD++ H + NS+ +C+
Sbjct: 857 PVPFQHKSPTKPDVLPSGH-KVDANSKILFCL 887
>At5g17650.1 68418.m02069 glycine/proline-rich protein
glycine/proline-rich protein GPRP - Arabidopsis
thaliana, EMBL:X84315
Length = 173
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -2
Query: 327 HHDTCYRRHPDRTYEYHHHGHAEF 256
HH Y H Y Y +HGH +F
Sbjct: 122 HHHGHYGHHHGHGYGYGYHGHGKF 145
>At5g01010.1 68418.m00001 expressed protein
Length = 409
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = -2
Query: 225 STGLVTSLLAHAVGLPRVLGHRNVNIIDQVR-TDGRLEHEREGLG 94
+TG+ +L+ + VG+P+VL ++ I Q+ DG +E +RE G
Sbjct: 203 ATGVYKTLVKYLVGVPQVL----LDFIRQINDDDGPMEEQRERYG 243
>At3g60300.1 68416.m06740 RWD domain-containing protein contains
weak similarity to RING finger protein 25 (RING finger
protein AO7) (Swiss-Prot:Q9QZR0) [Mus musculus]
Length = 366
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 598 RAGKGKMRNRRRIQRKGPLIIFNKGSGSDSRLP 696
R G+G+ R R R + +GP + K + D R P
Sbjct: 321 RRGRGRWRGRGRSRGRGPTVNERKPNSQDPRKP 353
>At3g25840.1 68416.m03219 protein kinase family protein contains
Pfam profile: PF00069 eukaryotic protein kinase domain
Length = 935
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = -2
Query: 309 RRHPDRTYEYHHHGHAEFGDSTSSTP*FSTGLVTSLLAHAVGLPRVLGH 163
+RH R +++HHH H D S G T +L P V+ +
Sbjct: 29 KRHKHRHHKHHHHRHRHHRDKKRENEIPSAGDETEILDVTPAAPIVVSN 77
>At5g40370.1 68418.m04897 glutaredoxin, putative similar to
glutaredoxin [Ricinus communis] SWISS-PROT:P55143
Length = 111
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 240 WTCCRRIPRVRGGGTHRSGQGAFGNMCRGGRM 335
WT R +P V GG H G A N+ + G++
Sbjct: 61 WTGQRTVPNVFIGGNHIGGCDATSNLHKDGKL 92
>At4g11230.1 68417.m01819 respiratory burst oxidase, putative /
NADPH oxidase, putative similar to respiratory burst
oxidase homolog F [gi:3242456], RbohAp108 [gi:2654868]
from Arabidopsis thaliana, respiratory burst oxidase
homolog [GI:16549087] from Solanum tuberosum; contains
Pfam profile PF01794 Ferric reductase like transmembrane
component
Length = 941
Score = 27.5 bits (58), Expect = 9.2
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +2
Query: 347 EALAALAPSRQPPTAESGLGGSVAATGVPA-LVQARGHIIEKIPELPLVVADKVQRSTRP 523
E L A S+Q S G ++ P +V RG I + + LP ++ QR TRP
Sbjct: 103 ERLTAGTNSKQQIQKISRRGYGYSSRSAPEPVVPHRGEITDSV-NLPRALS---QRPTRP 158
Query: 524 NRLSSS*GASRHGL 565
NR S + HGL
Sbjct: 159 NRDGSGTERAIHGL 172
>At1g10410.1 68414.m01173 expressed protein similar to ESTs
gb|N96021 and gb|N96863
Length = 485
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 592 RLRAGKG-KMRNRRRIQRKGPLIIFNKGSGSDSRLPQHPR 708
+LR+ K K R RR+IQRK + GS L H R
Sbjct: 15 KLRSSKRRKSRRRRKIQRKRAAVSSRLSDGSFDNLDHHHR 54
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,717,618
Number of Sequences: 28952
Number of extensions: 299443
Number of successful extensions: 1025
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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