Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20346
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...   142   3e-35
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...   142   3e-35
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       28   1.2  
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha...    28   1.5  
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch...    28   1.5  
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar...    28   1.5  
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha...    28   1.5  
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...    28   1.5  
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ...    27   2.7  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    27   3.5  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.5  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    26   6.1  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   6.1  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    25   8.1  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    25   8.1  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   8.1  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    25   8.1  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score =  142 bits (345), Expect = 3e-35
 Identities = 61/75 (81%), Positives = 68/75 (90%)
 Frame = +2

Query: 29  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 208
           M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1   MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60

Query: 209 SSEALEAGRICCNKY 253
           +SEALEA RIC NKY
Sbjct: 61  TSEALEAARICANKY 75



 Score =  133 bits (321), Expect = 3e-32
 Identities = 65/99 (65%), Positives = 75/99 (75%), Gaps = 1/99 (1%)
 Frame = +1

Query: 256 VKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIM 435
           VK  GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +M
Sbjct: 77  VKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLM 136

Query: 436 SVRSSDRWKAQVIEALRRAKFKFPDVKRSTYQRS-GVSQ 549
           SVR+ D  +A  IEALRR ++KFP  +R    +  G SQ
Sbjct: 137 SVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQ 175



 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 23/52 (44%), Positives = 34/52 (65%)
 Frame = +3

Query: 489 CQVQVPRRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 644
           CQ + P +Q+I VSKKWGF++Y RDE+ + R  G +  DGC  ++  + G L
Sbjct: 155 CQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSL 206


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score =  142 bits (345), Expect = 3e-35
 Identities = 61/75 (81%), Positives = 68/75 (90%)
 Frame = +2

Query: 29  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 208
           M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1   MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60

Query: 209 SSEALEAGRICCNKY 253
           +SEALEA RIC NKY
Sbjct: 61  TSEALEAARICANKY 75



 Score =  132 bits (320), Expect = 4e-32
 Identities = 65/99 (65%), Positives = 75/99 (75%), Gaps = 1/99 (1%)
 Frame = +1

Query: 256 VKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIM 435
           VK  GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +M
Sbjct: 77  VKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILM 136

Query: 436 SVRSSDRWKAQVIEALRRAKFKFPDVKRSTYQRS-GVSQ 549
           SVR+ D  +A  IEALRR ++KFP  +R    +  G SQ
Sbjct: 137 SVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQ 175



 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 23/52 (44%), Positives = 34/52 (65%)
 Frame = +3

Query: 489 CQVQVPRRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 644
           CQ + P +Q+I VSKKWGF++Y RDE+ + R  G +  DGC  ++  + G L
Sbjct: 155 CQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSL 206


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +2

Query: 53  YRYCKNKPYPKSRFCRGVPDP-KIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEALEA 229
           Y+   N     ++FC  V +  KI   +  +KRA +D   LC+  +S + E ++  +LE+
Sbjct: 34  YQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLES 93

Query: 230 G 232
           G
Sbjct: 94  G 94


>SPBC1348.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 596 EAALFTQLLKLITFILCETPLL*YVDLLTSGNLN 495
           +A  F ++L    FI C +P+L Y+  +  GN +
Sbjct: 264 KARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFD 297


>SPBPB2B2.19c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 596 EAALFTQLLKLITFILCETPLL*YVDLLTSGNLN 495
           +A  F ++L    FI C +P+L Y+  +  GN +
Sbjct: 264 KARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFD 297


>SPAC977.01 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1||Partial|Manual
          Length = 316

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 596 EAALFTQLLKLITFILCETPLL*YVDLLTSGNLN 495
           +A  F ++L    FI C +P+L Y+  +  GN +
Sbjct: 236 KARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFD 269


>SPAC750.05c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 596 EAALFTQLLKLITFILCETPLL*YVDLLTSGNLN 495
           +A  F ++L    FI C +P+L Y+  +  GN +
Sbjct: 264 KARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFD 297


>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +1

Query: 445 SSDRWKAQVIEALRRAKFKFPDVKR-STYQRSGVSQSMNVMSLRSCVKRAASPMTAASCS 621
           SS + K    E ++++K K  +  R S++ R+     MN M LR   +   S   AAS +
Sbjct: 188 SSPKPKPAKSEPVKQSKPKATETARPSSFSRNEDRVKMNRMRLRIAERLKESQNRAASLT 247

Query: 622 TARNMDLSTL 651
           T    D+S +
Sbjct: 248 TFNECDMSAV 257


>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 29/86 (33%), Positives = 40/86 (46%)
 Frame = +3

Query: 66  KINRIRNRGSVGVYLIPRSVSSIWVRRERTLTTFHCACTWCPTNMNS*AQRLWRQDVSAA 245
           KI R+R+  SV + L   S+S  W  R   L   H   T   +  +  A RL  + VS  
Sbjct: 340 KIKRLRSEPSVSLTL---SIS--WYERFEKL--MHAQNTMLRSAFSHVA-RLPMETVSQL 391

Query: 246 ISTRKELRKGSVPYPHETSPFPRYPH 323
           +S   E     +P P ETSP P+ P+
Sbjct: 392 LSHYTETISQYLP-PSETSPIPKTPN 416


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 225 RQDVSAAISTRKELRKGSVPYPHET 299
           + +VSAA     EL   SVP+PH++
Sbjct: 320 KTNVSAAYEKPAELSSSSVPFPHKS 344


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1038

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 402  STLRLAKRTTHPSLEPISSSAR-*HFIDADNVERVKSHAD 286
            +T +LAKR T PSL P  S+    H I  +  ++ KS A+
Sbjct: 957  TTTKLAKRITQPSLSPARSTVTITHNIATEAKKKSKSAAN 996


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 86  SRFCRGVPDPKIRIFDLGKKRANVDDFP-LCVHLVSDE 196
           S FC   PDPK       K  A+ DD P +  H+ S++
Sbjct: 84  SFFCTTTPDPKTESPSFVKYNAHCDDHPEISGHVSSND 121


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 131  DLGKKRANVDDFPLCVHLVSDEYEQL 208
            ++ KKRA  DD    + +VS EYE L
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENL 1058


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 110 DPKIRIFDLGKKRANVDDFPLCV-HLVSDEYEQLSSEALEA 229
           DPK+R+F    KRA   +   C   LV+ +   + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 269 PQFFTGTYCSRYVLPPKPLSSAVHIRRTPSARTVES 162
           P  FTG       +PP+P+ SA+  +   SA ++E+
Sbjct: 498 PTKFTGGASESSSVPPRPIPSAMKGKAPASAISIEA 533


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 271 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 375
           +D  H+RM ++ FH   IN MLS +  D  +  MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +3

Query: 96  VGVYLIPRSVSSIWV 140
           +GVYLIP++ S +W+
Sbjct: 394 IGVYLIPKAWSDLWL 408


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,232,025
Number of Sequences: 5004
Number of extensions: 71242
Number of successful extensions: 237
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)