Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20346
(714 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 135 3e-32
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 132 3e-31
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 131 5e-31
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 31 1.2
02_02_0317 + 8893593-8894207 31 1.2
11_08_0094 - 28314681-28314747,28315264-28315353,28315589-283157... 30 2.1
04_03_0069 - 10665455-10666902,10669889-10670138 29 2.8
05_01_0508 + 4242705-4242886,4243129-4243234,4246179-4246517 29 3.7
01_01_0749 - 5794140-5794346,5795445-5795558,5795856-5796008,579... 29 3.7
11_06_0492 - 24304313-24305263,24305375-24305721,24305793-24305931 29 4.8
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997... 28 6.4
07_03_0604 + 19903654-19904598 28 6.4
04_04_1108 + 30961600-30962013,30963131-30964465 28 6.4
04_01_0289 + 3830052-3831134,3831141-3831230,3831494-3831525,383... 28 6.4
06_03_1485 + 30462009-30462098,30462212-30462340,30462416-304625... 28 8.5
06_01_0766 - 5729550-5731057,5731248-5731515 28 8.5
05_07_0337 - 29368823-29368863,29369011-29369104,29369231-293693... 28 8.5
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 135 bits (327), Expect = 3e-32
Identities = 63/92 (68%), Positives = 73/92 (79%)
Frame = +1
Query: 259 KNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 438
KN GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++S
Sbjct: 78 KNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLS 137
Query: 439 VRSSDRWKAQVIEALRRAKFKFPDVKRSTYQR 534
VR + EALRRAKFKFP ++ + R
Sbjct: 138 VRCKESNAKHAEEALRRAKFKFPGRQKIIHSR 169
Score = 133 bits (321), Expect = 2e-31
Identities = 58/75 (77%), Positives = 64/75 (85%)
Frame = +2
Query: 29 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 208
MGRRPARCYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENV 60
Query: 209 SSEALEAGRICCNKY 253
SSEALEA RI CNKY
Sbjct: 61 SSEALEAARIACNKY 75
Score = 56.8 bits (131), Expect = 2e-08
Identities = 25/47 (53%), Positives = 32/47 (68%)
Frame = +3
Query: 504 PRRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 644
P RQKI S+KWGFTK+ R+E+ KL+ EGR+ +DG Q HG L
Sbjct: 160 PGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRL 206
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 132 bits (319), Expect = 3e-31
Identities = 61/83 (73%), Positives = 68/83 (81%)
Frame = +1
Query: 259 KNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 438
K+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++S
Sbjct: 74 KSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLS 133
Query: 439 VRSSDRWKAQVIEALRRAKFKFP 507
VR EALRRAKFKFP
Sbjct: 134 VRCKPNNAVHASEALRRAKFKFP 156
Score = 113 bits (272), Expect = 1e-25
Identities = 50/73 (68%), Positives = 59/73 (80%)
Frame = +2
Query: 50 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEALEA 229
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS E E ++SEALEA
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 230 GRICCNKYP*RTA 268
RI CNKY ++A
Sbjct: 64 ARIACNKYMTKSA 76
Score = 52.4 bits (120), Expect = 3e-07
Identities = 21/35 (60%), Positives = 27/35 (77%)
Frame = +3
Query: 504 PRRQKIYVSKKWGFTKYERDEFEKLREEGRLANDG 608
P RQKI S+KWGFTK+ RDE+ +L+ EGR+ DG
Sbjct: 156 PGRQKIIESRKWGFTKFSRDEYVRLKSEGRIMPDG 190
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 131 bits (317), Expect = 5e-31
Identities = 62/87 (71%), Positives = 70/87 (80%)
Frame = +1
Query: 259 KNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 438
K+ GKD FH+R+ HP+HV+RINKMLSCAGADRLQTGMRGAFGKP GT ARVRIGQ ++S
Sbjct: 385 KHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTGTCARVRIGQVLLS 444
Query: 439 VRSSDRWKAQVIEALRRAKFKFPDVKR 519
VR D A EALRRAKFKFP +R
Sbjct: 445 VRCRDANAAHAQEALRRAKFKFPGRQR 471
Score = 127 bits (307), Expect = 8e-30
Identities = 55/71 (77%), Positives = 61/71 (85%)
Frame = +2
Query: 41 PARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEA 220
P RCYR KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E E +SSEA
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEA 371
Query: 221 LEAGRICCNKY 253
LEA RI CNKY
Sbjct: 372 LEAARIACNKY 382
Score = 53.2 bits (122), Expect = 2e-07
Identities = 21/45 (46%), Positives = 30/45 (66%)
Frame = +3
Query: 504 PRRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHG 638
P RQ++ S KWGFT+++RDE+ KL+ EGR+ DG + HG
Sbjct: 467 PGRQRVIFSAKWGFTRFKRDEYLKLKSEGRIVPDGVNAKLLTRHG 511
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -2
Query: 431 MGCPMRTRATVP*GLPNAPRIPVWSLSAPAH 339
+ CP+ + + VP LP++P P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>02_02_0317 + 8893593-8894207
Length = 204
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = -1
Query: 675 GSQPEPSSKRREVHVP---GGTARCSRHWRGGP 586
G +P P++ R +HVP GG R RHWR P
Sbjct: 3 GRRPRPAAGTR-IHVPQPCGGEIRWERHWRPDP 34
>11_08_0094 -
28314681-28314747,28315264-28315353,28315589-28315725,
28317020-28317589
Length = 287
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -2
Query: 269 PQFFTGTYCSRYVLPPKPLSSAVHIRRTPSARTVESRQRSLSSYPNRR 126
P+F+T ++C R + L +++ R AR + RQ S SS P+ +
Sbjct: 50 PRFYTCSFCQREFRSAQALGGHMNVHRRDRAR-LRQRQTSSSSSPSHQ 96
>04_03_0069 - 10665455-10666902,10669889-10670138
Length = 565
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = +1
Query: 484 RRAKFKFPDVKRSTYQRSGVSQSMNVMSLRSCVKRAASPMTAASCSTARNMDLSTLGGRF 663
R A KF V TY + V+SLRS +K+A + SC A+ +++
Sbjct: 457 RPALAKFMAVPHYTYMMMKMPGPRGVISLRSDIKQAVT-CDKESCEMAQTREITLAREEI 515
Query: 664 RLRSSM 681
RL ++M
Sbjct: 516 RLAATM 521
>05_01_0508 + 4242705-4242886,4243129-4243234,4246179-4246517
Length = 208
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Frame = -1
Query: 324 DADNVERVKSHADMELILSAVLYGYLLQQIR-----PASKASELSCSYSSDTKCTHSGKS 160
+ DN+ V AD L+++A +++Q + PA+ A+ C+ S TK H G+
Sbjct: 143 NCDNLPVVPLGADQPLVMAACKRAAVIKQQQQASSSPATAAAAAQCAVPSSTKAIHVGEE 202
Query: 159 S 157
+
Sbjct: 203 A 203
>01_01_0749 -
5794140-5794346,5795445-5795558,5795856-5796008,
5796124-5796207,5796262-5796399,5796500-5796598
Length = 264
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3
Query: 471 HRGSAPCQVQVPRRQKIYVSKKWGFTKYERDEFEKLREE 587
HR S P + VPRR+++Y S+++ +Y D + + E
Sbjct: 123 HRAS-PLPLFVPRRRRVYSSEEYSSDEYSSDGYSSGQHE 160
>11_06_0492 - 24304313-24305263,24305375-24305721,24305793-24305931
Length = 478
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 428 PSCPCALVTGGRHRSSRLCAVPSSSSPTSKDLRIKEV 538
P P L GRH +R+ +S S DLR++E+
Sbjct: 210 PESPRWLAMRGRHADARVVLARTSDSAEEADLRLEEI 246
>09_06_0320 - 22297579-22297760,22298433-22299358,22299422-22299747,
22300591-22300660,22301632-22301726,22301917-22302048,
22302154-22302222,22302953-22303051,22303169-22303253,
22303353-22303453,22303660-22303728,22303861-22303901,
22304085-22304303,22304444-22304470,22304562-22304660,
22304898-22305106,22305382-22305485,22305753-22305894,
22305991-22306289,22306508-22306903
Length = 1229
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 385 GKPQGTVARVRIGQPIMSVRSSD 453
G PQ T+ R+ +G P +S++S+D
Sbjct: 1089 GTPQQTLERLHVGHPTLSLQSND 1111
>07_03_0604 + 19903654-19904598
Length = 314
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 630 PGGTARCSRHWRGGPLHAASQTHH 559
PGG R R G P+H A + HH
Sbjct: 80 PGGRRRRPRRVEGAPVHRARRLHH 103
>04_04_1108 + 30961600-30962013,30963131-30964465
Length = 582
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -2
Query: 269 PQFFTGTYCSRYVLPPKPLSSAVHIRRTPSARTVESRQRSLSS 141
P F+ C + PP PL++ V + P+A + S + +++S
Sbjct: 95 PGRFSCPLCGAEIAPPPPLAAVVSVVAPPAAIPITSNRPAMTS 137
>04_01_0289 +
3830052-3831134,3831141-3831230,3831494-3831525,
3833690-3834623
Length = 712
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 152 NVDDFPLCVHLVSDEYEQLSSEALEAGR-ICC 244
NV++ P + L+ DE +++ E L AGR I C
Sbjct: 679 NVEEIPTSMDLMKDENDKIQLEILTAGRNIAC 710
>06_03_1485 +
30462009-30462098,30462212-30462340,30462416-30462520,
30462626-30462706,30462885-30463000,30463083-30463184,
30463298-30463417,30463678-30463748,30463805-30463899,
30464001-30464075,30464130-30464219,30464687-30464794
Length = 393
Score = 27.9 bits (59), Expect = 8.5
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Frame = -1
Query: 273 LSAVLYGYLLQ-----QIRPASKASELSCSYSSDTKCTHSGKSSTFALFLPKSKIRILGS 109
LSA ++G+ + QI P + L CS + SG S L+ P IL +
Sbjct: 10 LSAAVFGFFIGISFPVQITPQLQCGLLPCSSGDGANYSFSGSSMIGILWSPFRNTTILSN 69
Query: 108 GT 103
GT
Sbjct: 70 GT 71
>06_01_0766 - 5729550-5731057,5731248-5731515
Length = 591
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -2
Query: 107 VHPDRTS-ISDTVYFCSTGSISLAGAPW*SLQSDS 6
+H D TS + D +FC ++ PW +++DS
Sbjct: 291 IHLDHTSTVEDKFFFCDEDQRAIRNIPWLVMRTDS 325
>05_07_0337 -
29368823-29368863,29369011-29369104,29369231-29369347,
29369751-29369804,29369910-29370026,29370170-29370310,
29370402-29370820,29370906-29370934,29371287-29371354,
29371833-29371907
Length = 384
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = -1
Query: 276 ILSAVLYGYLLQQIRPASKASELSCSYSS 190
+L+A+L GY++ I AS++ ELS S+ S
Sbjct: 230 LLTALLSGYVVSTIEAASESWELSVSFIS 258
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,703,169
Number of Sequences: 37544
Number of extensions: 539407
Number of successful extensions: 1685
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1684
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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