Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20346
         (714 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...   142   2e-34
AF016450-13|AAB65988.2|  472|Caenorhabditis elegans Hypothetical...    30   1.4  
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ...    30   1.9  
Z66511-7|CAD57693.1|  567|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like pro...    29   4.4  
Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z68317-4|CAA92688.1|  486|Caenorhabditis elegans Hypothetical pr...    28   7.6  
U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr...    28   7.6  
AF099913-8|ABB51194.1|  301|Caenorhabditis elegans Hypothetical ...    28   7.6  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score =  142 bits (345), Expect = 2e-34
 Identities = 63/75 (84%), Positives = 66/75 (88%)
 Frame = +2

Query: 29  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 208
           MGRRPARCYRY KNKPYPKSRFCRGVPD KIRIFDLG KRANVD FP CVH++S+E E L
Sbjct: 1   MGRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHL 60

Query: 209 SSEALEAGRICCNKY 253
           SSEALEA RIC NKY
Sbjct: 61  SSEALEAARICANKY 75



 Score =  130 bits (315), Expect = 7e-31
 Identities = 61/84 (72%), Positives = 67/84 (79%)
 Frame = +1

Query: 256 VKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIM 435
           VKNCGKD FH+R+R HPFHV RINKMLSCAGADRLQTGMRGA+GKPQG VARV IG  + 
Sbjct: 77  VKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYGKPQGLVARVDIGDILF 136

Query: 436 SVRSSDRWKAQVIEALRRAKFKFP 507
           S+R  +      IEA RRAKFKFP
Sbjct: 137 SMRIKEGNVKHAIEAFRRAKFKFP 160



 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 28/50 (56%), Positives = 38/50 (76%)
 Frame = +3

Query: 504 PRRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPLDAW 653
           P RQ I  S+KWGFTK++R+++E++R EGRL +DG  VQ + EHGPL  W
Sbjct: 160 PGRQIIVSSRKWGFTKWDREDYERMRAEGRLRSDGVGVQLQREHGPLTKW 209


>AF016450-13|AAB65988.2|  472|Caenorhabditis elegans Hypothetical
           protein B0238.9 protein.
          Length = 472

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/68 (20%), Positives = 33/68 (48%)
 Frame = +3

Query: 69  INRIRNRGSVGVYLIPRSVSSIWVRRERTLTTFHCACTWCPTNMNS*AQRLWRQDVSAAI 248
           + R+ + GS   + +P+  +++W R+ ++L    C C      M    Q L+ ++ +   
Sbjct: 82  VKRLASLGSARGWTVPQRRNNLWERKGQSLIGKFCRCRCDRGQMTRDKQALYEKEKAVEK 141

Query: 249 STRKELRK 272
             +K+ +K
Sbjct: 142 EKKKKAKK 149


>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
           protein D1007.15 protein.
          Length = 1184

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 26/73 (35%), Positives = 37/73 (50%)
 Frame = -3

Query: 274 PFRSSLRVLIAADTSCLQSL*AQLFIFVGHQVHAQWKVVNVRSLLTQIEDTDLGIRYTPT 95
           P ++ L   ++AD S LQ    QL   + H V   + V+ V +LL  I  T +   Y+  
Sbjct: 226 PIKNHLETALSADDSPLQ-FDYQLQYMI-HNVFEHY-VIPV-ALLCSILGTIVRFCYSDD 281

Query: 94  EPRFRIRFIFAVP 56
           E  F  RF+FAVP
Sbjct: 282 ENLFGTRFVFAVP 294


>Z66511-7|CAD57693.1|  567|Caenorhabditis elegans Hypothetical
           protein F07A11.6d protein.
          Length = 567

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -1

Query: 462 LPPVTRAHGHDGLSNANTCYSTLRLAKRTTHPSLEPISSSA 340
           +P VT A   + LSN  T  ST  LA   T  +L P+S  A
Sbjct: 46  VPVVTTASTPNPLSNLETLLSTASLANLATGGALNPLSMLA 86


>AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like
           protein 2 protein.
          Length = 205

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +2

Query: 89  RFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEALEAGR 235
           R C  +   K  I D  K+ A ++     + +++ EYEQ++S   +AG+
Sbjct: 93  RACDFMSQLKTDISDADKQLAQLNAQAAALEMIASEYEQMASSVPDAGQ 141


>Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical
           protein C09G5.2 protein.
          Length = 476

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 392 GLPNAPRIPVWSLSAPA 342
           G PN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248


>Z68317-4|CAA92688.1|  486|Caenorhabditis elegans Hypothetical
           protein T01H3.4 protein.
          Length = 486

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/72 (26%), Positives = 32/72 (44%)
 Frame = +3

Query: 495 VQVPRRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPLDAWRKVQAEI 674
           V  P R  +    +W F +Y   +FE  +      ND  IV+  P +G  D    +  ++
Sbjct: 120 VYEPERDPVVFKPQWPFPEYCASKFEAEKLVKSAPNDCYIVRCVPTYGEGDDC-SILTDL 178

Query: 675 LNV*SDQYILLL 710
           +   +D+ IL L
Sbjct: 179 IYFSNDKTILFL 190


>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical
           protein F45E4.4 protein.
          Length = 2361

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 544 SQSMNVMSLRSCVKRAASPMTAASCSTARNM 636
           ++  ++MS+ S   R  SPMT+  CS+A  M
Sbjct: 88  AEKQHIMSVMSRSNRNTSPMTSRRCSSALQM 118


>AF099913-8|ABB51194.1|  301|Caenorhabditis elegans Hypothetical
           protein C29F9.4 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 543 FTKYERDEFEKLREEGRLANDGCIVQYR 626
           F K +RDEFE++R +  LA +  I  Y+
Sbjct: 136 FFKSQRDEFERIRYDPELAEEHFIEAYK 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,278,938
Number of Sequences: 27780
Number of extensions: 419758
Number of successful extensions: 1265
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1265
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)