Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20346
         (714 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont...   134   7e-32
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi...   132   2e-31
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near...   132   2e-31
At5g47870.1 68418.m05914 expressed protein                             31   0.76 
At3g59190.1 68416.m06599 F-box family protein contains F-box dom...    29   4.0  
At5g45640.1 68418.m05612 subtilase family protein contains Pfam ...    28   5.3  
At4g04130.1 68417.m00583 Ulp1 protease family protein contains P...    28   5.3  
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa...    27   9.3  
At1g19510.1 68414.m02430 myb family transcription factor contain...    27   9.3  

>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
           contains Pfam profile: PF00826: Ribosomal L10
          Length = 221

 Score =  134 bits (323), Expect = 7e-32
 Identities = 74/143 (51%), Positives = 89/143 (62%), Gaps = 10/143 (6%)
 Frame = +2

Query: 29  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 208
           MGRRPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS E E +
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60

Query: 209 SSEALEAGRICCNKYP*RTAERIS---SISA*DFTLSTLSASIKCYRALEL-------IG 358
           SSEALEA RI CNKY  ++A + +    I    F +  ++  + C  A  L        G
Sbjct: 61  SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 359 SRLGCVVRLASLRVL*HVFALDN 427
             LG   R+A  +VL  V   DN
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDN 143



 Score =  131 bits (316), Expect = 5e-31
 Identities = 61/84 (72%), Positives = 68/84 (80%)
 Frame = +1

Query: 256 VKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIM 435
           VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK  GT ARV IGQ ++
Sbjct: 77  VKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLL 136

Query: 436 SVRSSDRWKAQVIEALRRAKFKFP 507
           SVR  D       EALRRAKFKFP
Sbjct: 137 SVRCKDNHGVHAQEALRRAKFKFP 160



 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 25/47 (53%), Positives = 31/47 (65%)
 Frame = +3

Query: 504 PRRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 644
           P RQKI VS+KWGFTK+ R E+ KLR   R+  DG   ++   HGPL
Sbjct: 160 PGRQKIIVSRKWGFTKFNRAEYTKLRAMKRIVPDGVNAKFLSNHGPL 206


>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
           Wilm's tumor suppressor protein-related similar to tumor
           suppressor GI:575354 from [Oryza sativa]
          Length = 220

 Score =  132 bits (320), Expect = 2e-31
 Identities = 59/80 (73%), Positives = 66/80 (82%)
 Frame = +2

Query: 29  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 208
           MGRRPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS E E +
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60

Query: 209 SSEALEAGRICCNKYP*RTA 268
           SSEALEA RI CNKY  ++A
Sbjct: 61  SSEALEAARIACNKYMVKSA 80



 Score =  130 bits (313), Expect = 1e-30
 Identities = 61/84 (72%), Positives = 68/84 (80%)
 Frame = +1

Query: 256 VKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIM 435
           VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK  GT ARV IGQ ++
Sbjct: 77  VKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLL 136

Query: 436 SVRSSDRWKAQVIEALRRAKFKFP 507
           SVR  D       EALRRAKFKFP
Sbjct: 137 SVRCKDAHGHHAQEALRRAKFKFP 160



 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 26/47 (55%), Positives = 33/47 (70%)
 Frame = +3

Query: 504 PRRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 644
           P RQKI VS+KWGFTK+ R +F KLR+E R+  DG   ++   HGPL
Sbjct: 160 PGRQKIIVSRKWGFTKFNRADFTKLRQEKRVVPDGVNAKFLSCHGPL 206


>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
           identical to ribosomal protein L10.e, Wilm's tumor
           suppressor homologue, gi|17682 (Z15157), however
           differences in sequence indicate this is a different
           member of the L10 family
          Length = 221

 Score =  132 bits (319), Expect = 2e-31
 Identities = 59/80 (73%), Positives = 66/80 (82%)
 Frame = +2

Query: 29  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 208
           MGRRPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS E E +
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENV 60

Query: 209 SSEALEAGRICCNKYP*RTA 268
           SSEALEA RI CNKY  ++A
Sbjct: 61  SSEALEAARIACNKYMVKSA 80



 Score =  130 bits (313), Expect = 1e-30
 Identities = 61/84 (72%), Positives = 68/84 (80%)
 Frame = +1

Query: 256 VKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIM 435
           VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK  GT ARV IGQ ++
Sbjct: 77  VKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLL 136

Query: 436 SVRSSDRWKAQVIEALRRAKFKFP 507
           SVR  D       EALRRAKFKFP
Sbjct: 137 SVRCKDAHGHHAQEALRRAKFKFP 160



 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 25/47 (53%), Positives = 33/47 (70%)
 Frame = +3

Query: 504 PRRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 644
           P RQKI VS+KWGFTK+ R ++ KLR+E R+  DG   ++   HGPL
Sbjct: 160 PGRQKIIVSRKWGFTKFNRADYTKLRQEKRIVPDGVNAKFLSCHGPL 206


>At5g47870.1 68418.m05914 expressed protein
          Length = 199

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 21/74 (28%), Positives = 31/74 (41%)
 Frame = +1

Query: 289 RMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQ 468
           R++L PF  + +N+ + C+G      G+ G     +  V       PI    SS      
Sbjct: 23  RIKLSPFRTVAVNRGVRCSGG-----GVGGGDAGKKKAVPNSNYVVPIDKFSSSSSITRP 77

Query: 469 VIEALRRAKFKFPD 510
           +IE LR    K PD
Sbjct: 78  LIEILRDLNKKIPD 91


>At3g59190.1 68416.m06599 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 388

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 18/36 (50%), Positives = 19/36 (52%)
 Frame = +2

Query: 143 KRANVDDFPLCVHLVSDEYEQLSSEALEAGRICCNK 250
           K AN  DF + V  V   Y  LSSEALE    CC K
Sbjct: 297 KGANAADFMMGVCNVKTMY--LSSEALEVLTFCCKK 330


>At5g45640.1 68418.m05612 subtilase family protein contains Pfam
           domain, PF00082: Subtilase family; contains Pfam domain,
           PF02225: protease associated (PA) domain
          Length = 754

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 504 PRRQKIYVSKKWGFTKYERDEFEKLREEG 590
           PR+ KI+ ++ W F   + +E E  R +G
Sbjct: 67  PRKYKIHTTRSWEFVGLKEEEGEDYRSDG 95


>At4g04130.1 68417.m00583 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At2g11345,  At3g42690
          Length = 1200

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 20/77 (25%), Positives = 39/77 (50%)
 Frame = +1

Query: 460 KAQVIEALRRAKFKFPDVKRSTYQRSGVSQSMNVMSLRSCVKRAASPMTAASCSTARNMD 639
           K +  +A++RAK ++  ++R  + RS   + +NV  L +   +AA+P+           D
Sbjct: 473 KCEPSKAVKRAKKEYYPIRRKPFTRSSKKEGLNVEPLPT-QDKAATPVGKTVHKKTAKQD 531

Query: 640 LSTLGGRFRLRSSMYNL 690
            +TL  +  L +  YN+
Sbjct: 532 -ATLIKQAPLLNLRYNI 547


>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
           domain-containing protein / RNA recognition motif
           (RRM)-containing protein KIAA0122 gene , Homo sapiens,
           EMBL:HSDKG02; contains Pfam profiles  PF00076: RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF01585: G-patch domain, weak hit to PF00641: Zn-finger
           in Ran binding protein and others
          Length = 1105

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 137 PNRRYG-SWDQVHPDRTSISDTVYFCSTGSISLAGAP 30
           PN R+G S+D  +PD   + D VY    G  +L   P
Sbjct: 53  PNHRFGVSYDDGYPDERLMRDDVYNYPPGHNTLGDLP 89


>At1g19510.1 68414.m02430 myb family transcription factor contains
           PFAM profile: PF00249 myb-like DNA binding domain
          Length = 100

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 104 VPDPKIRIFDLGKKRANVDDFPL 172
           VP PK +  D+G K   +DDF L
Sbjct: 69  VPLPKYKTVDVGSKSRGIDDFDL 91


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,406,349
Number of Sequences: 28952
Number of extensions: 397811
Number of successful extensions: 1263
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1263
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)