Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20344
         (795 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q16SC1 Cluster: Zinc finger protein; n=1; Aedes aegypti...    38   0.29 
UniRef50_Q9VRV4 Cluster: CG10270-PA; n=3; Sophophora|Rep: CG1027...    36   1.2  
UniRef50_UPI00005A014D Cluster: PREDICTED: hypothetical protein ...    34   4.7  
UniRef50_Q2EI20 Cluster: RE1-silencing transcription factor; n=2...    34   4.7  

>UniRef50_Q16SC1 Cluster: Zinc finger protein; n=1; Aedes
           aegypti|Rep: Zinc finger protein - Aedes aegypti
           (Yellowfever mosquito)
          Length = 550

 Score = 37.9 bits (84), Expect = 0.29
 Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
 Frame = +1

Query: 283 PNRLICEVCITRLRDACNFKKQVFECEKKFIDMVARGEFRKVLIYQAHMKSEEVGPEDEI 462
           PN  IC VC++RL +A   ++     ++   DMV + E   ++      + EE   E + 
Sbjct: 50  PNS-ICSVCLSRLEEAYKLRELSQTSQEALYDMVFKAEKADIV-----PEEEENATEYDD 103

Query: 463 QADESEYLEE-DPDFGATSH*NERSLNQRYLLSPYRSKVN 579
           +  E EYLEE D      +H  E  + +  ++ P ++K++
Sbjct: 104 EIYEVEYLEEPDAPLMIEAHETEIKIEESEIVEPEQNKLS 143


>UniRef50_Q9VRV4 Cluster: CG10270-PA; n=3; Sophophora|Rep:
           CG10270-PA - Drosophila melanogaster (Fruit fly)
          Length = 774

 Score = 35.9 bits (79), Expect = 1.2
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = +1

Query: 268 EGPNGPNRLICEVCITRLRDACNFKKQVFECEKKFIDMVARGEF 399
           E  +G  + +C VC ++L D  +F+KQ  +  +KF D+VA   F
Sbjct: 47  EQADGFPKNLCNVCFSKLNDLHDFQKQCVDSVQKFQDLVASNAF 90


>UniRef50_UPI00005A014D Cluster: PREDICTED: hypothetical protein
           XP_859582; n=1; Canis lupus familiaris|Rep: PREDICTED:
           hypothetical protein XP_859582 - Canis familiaris
          Length = 242

 Score = 33.9 bits (74), Expect = 4.7
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +1

Query: 322 RDACNFKKQVFECEKKFIDMVARGEFRKVLIYQAHMKSEEVGPEDEIQADESEYLEE 492
           +D    K+QV +  K ++  +  G      I +A  KS E G E+E + +E E  EE
Sbjct: 5   KDGKQVKRQVTQARKDYLQQIHTGSTNNQNIKEAPTKSIEKGTEEEEEEEEEEEEEE 61


>UniRef50_Q2EI20 Cluster: RE1-silencing transcription factor; n=2;
           Danio rerio|Rep: RE1-silencing transcription factor -
           Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 855

 Score = 33.9 bits (74), Expect = 4.7
 Identities = 35/127 (27%), Positives = 52/127 (40%), Gaps = 3/127 (2%)
 Frame = +1

Query: 277 NGPNRLICEVCITRLRDACNFKKQV--FECEKKFIDMVARGEFRKVLIYQAHMKSEEVGP 450
           NGP  L C  C  +  D  NFKK V      ++F+  V +    K    Q H+KS   G 
Sbjct: 344 NGPKPLSCPYCQYKTADRSNFKKHVELHVNPRQFLCPVCKYAASKKCNLQYHIKSRHPGC 403

Query: 451 EDEIQADESEY-LEEDPDFGATSH*NERSLNQRYLLSPYRSKVNVADQRNNQMPSPRKRN 627
           +D I  D S+  L      G  +  N+ +  Q  ++     ++  A   N  +  P K N
Sbjct: 404 KD-ISMDVSKVRLRVKRSDGDDASPNKLTAEQAKIM----EELEDAGPINLSIKKPSKLN 458

Query: 628 QIRTTRK 648
            +  T K
Sbjct: 459 AVVETEK 465


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 730,006,252
Number of Sequences: 1657284
Number of extensions: 13987364
Number of successful extensions: 40223
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 37720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40147
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 67908372675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)