Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20344
         (795 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    24   1.6  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    22   4.9  
AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone recepto...    22   4.9  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    22   4.9  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   6.5  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    22   6.5  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    22   6.5  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    21   8.6  

>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 538 NQRYLLSPYRSKVNVADQRNNQ-MPSPRK 621
           N RY     + +  + DQ+NN  +PSPR+
Sbjct: 90  NHRYKTKRAQHEKGMHDQQNNNPLPSPRR 118


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +1

Query: 262 INEGPNGPNRLICEVCITRLRDACNFKKQVFECEKKFIDMVARGEFR 402
           I EGP+    L     I RLR+  N   +V +  +K    V   E R
Sbjct: 97  IAEGPDAEKALQRAALILRLREGMNSLSRVLKSIEKHQGAVCHLETR 143


>AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone receptor
           (isoform B) protein.
          Length = 96

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 296 SARFASQDSEMHVTSRNKCLNAKKNSL 376
           SAR A ++S   VTS +  + +  NSL
Sbjct: 6   SARVAPEESSSEVTSSSALVMSPANSL 32


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 277 SVPHLFVITNIKAFQQHIRVNFIF 206
           ++ H+F+I  + A   + R NFI+
Sbjct: 29  TIVHIFIIIALYAHSSYGRENFIY 52


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = +1

Query: 415 YQAHMKSEEVGPEDEIQADESEYLEEDPDFGAT 513
           Y    KS   GP  ++   + E  EED +   T
Sbjct: 410 YTGEQKSRRKGPAFKVDPTQVESEEEDEETSTT 442


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 13/53 (24%), Positives = 22/53 (41%)
 Frame = -1

Query: 471 ISLYFVFGANFFRFHVCLVN*YFPKFSSCNHVNEFFFAFKHLFLEVTCISESC 313
           +S   +F   F  F V  +     +F + +    F F+F  + L    + ESC
Sbjct: 357 LSYLILFSIGFNCFWVMKLLYNVLRFGAESQTINFMFSFGFILLRFLSVFESC 409


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 510 RSEVGILF*ILRFISLYF-VFGANFFRFHVCLVN*YFPKFSSCNH 379
           RSEV  +  +L+ I+L       +     V L   YFP FS+C++
Sbjct: 240 RSEVVKILNVLKKIALRRQTTNGDLDELIVTLSTHYFPVFSACDY 284


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 513 EPLKREEPQPTVSAE 557
           EP+   EPQPT + E
Sbjct: 394 EPVPTPEPQPTQTTE 408


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,259
Number of Sequences: 336
Number of extensions: 3579
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21583952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)