Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20344
         (795 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p...    31   0.19 
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    29   1.0  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    29   1.0  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    29   1.0  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    28   1.8  
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    28   1.8  
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    27   3.1  
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    26   7.1  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    26   7.1  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    26   7.1  
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    25   9.4  
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    25   9.4  

>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 617 EKEIKYGRQEN*TCSKDKNSPFEP-STDTPAPGVFLGCTSERRRKNLKIIS 766
           E +I +G  EN T S D N P EP S +T AP   +    E  ++N  IIS
Sbjct: 60  EDDIDWGDMENDTISTDVNKPAEPESKETSAPAAAV----EIEKENESIIS 106


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 247 IKAFQQHIRVNFIFIHPSVLR 185
           IK+F  H++ NF F H ++LR
Sbjct: 265 IKSFYGHVQANFFFFHETLLR 285


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +1

Query: 454 DEIQADESEYLEEDPDFGATSH*NERSLNQRYLLSPY 564
           D+  ADES++LE   D   +S   E   NQ Y  SPY
Sbjct: 649 DDSNADESQFLEYANDSPNSSESLESLNNQSYSSSPY 685


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +1

Query: 340 KKQVFECEKKFIDMVARGEFRKVLIYQAHMKSEEVGPE--DEIQADESEYLEEDPD 501
           +KQVF C   FID     +F  +       K++EV  +  D + +DE E   E+ D
Sbjct: 475 RKQVFHCFLSFIDSYNEEDFSYLSDIGITEKTQEVSSKLPDVLSSDEEEDSAENKD 530


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 274 PNGPNRLICEVCITRLRDACNF 339
           P+  +   C  C+ RLR  CNF
Sbjct: 462 PDSTSHASCTYCVARLRSVCNF 483


>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +1

Query: 322 RDACNF--KKQVFECEKKFIDMVARGEFRK 405
           ++  NF  K +VF+ E  FI  + RGEF+K
Sbjct: 435 KEGLNFTGKARVFDAENDFIAALERGEFKK 464


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -3

Query: 205 IHPSVLRT*IFVTPFRKTAPAKAGILLHHNIVKLHH-YITILT 80
           + P  LRT   VT      P+KA  +LH+N   LH+ YI +++
Sbjct: 426 VDPLGLRTIGVVTKMDLVPPSKAISILHNNNYPLHYGYIGVIS 468


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 104 PSLYHDSNITLTNKVPYVTMTVF 36
           P+LY+    TL N VPYV++  F
Sbjct: 187 PALYNGLPATLLNVVPYVSICFF 209


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 918

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 21/71 (29%), Positives = 34/71 (47%)
 Frame = -1

Query: 528  LVSMARRSEVGILF*ILRFISLYFVFGANFFRFHVCLVN*YFPKFSSCNHVNEFFFAFKH 349
            L+++ R S   IL+ +L  IS   VF A FFR H+ +   + P+F     ++        
Sbjct: 845  LINLFRFSFSFILYNLL--ISTSTVFFAGFFRRHLMVWKVFAPRFM----LSGILLVTHQ 898

Query: 348  LFLEVTCISES 316
            LF+ + C   S
Sbjct: 899  LFVLIQCFGSS 909


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = -1

Query: 564  VRAQQIPLVEAPLVSMARRSEVGILF*ILRFISLYFVFGANFFRFHVCLVN*YFP 400
            V +  +PL+++PLV   R+++   L  IL   +L   F        VCL+N Y P
Sbjct: 1348 VNSSLLPLMQSPLVFCLRKNDANDLDVILSVCNLLSPFEV------VCLLNRYQP 1396


>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 21/95 (22%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
 Frame = +1

Query: 298 CEVCITRLRDACNFKKQVFECEKKFIDMVARGEFRKVLIYQAHMKSEEVG-PEDEIQADE 474
           CEV + RL      K+ + E   KF++  A  + +++L  +   K +  G      QA++
Sbjct: 111 CEVLVLRLDSPNELKENIREWSSKFMNSKA-SQKQQMLSPETMQKVDLAGRASPRYQAND 169

Query: 475 SEYLEEDPDFGATSH*NERSLNQRYLLSPYRSKVN 579
           S ++ +  +   +S     ++ + Y L+  +SK++
Sbjct: 170 S-WISKKRNAPLSSISQYANMPENYALNTKKSKIS 203


>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -2

Query: 200 SKCTQNLNLCNTLQKDSTGKGRDSPSPQYRQTPSLYHDSNITL 72
           S    N  + +   + S+      PS + R TP+  HDS +T+
Sbjct: 294 SPAATNSAISSPFVRKSSSDLEAKPSKKQRSTPAFSHDSPLTI 336


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,074,790
Number of Sequences: 5004
Number of extensions: 61739
Number of successful extensions: 171
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)