Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20344
         (795 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0204 + 2467657-2467781,2467955-2468044,2469071-2469169,246...    29   4.3  
09_04_0687 + 19465594-19465780,19465994-19466022,19466731-194668...    28   7.4  
01_01_1114 - 8820996-8821538,8826753-8827178                           28   9.8  

>04_01_0204 +
           2467657-2467781,2467955-2468044,2469071-2469169,
           2469353-2469371,2469965-2470021,2470585-2471265,
           2471639-2471742,2471919-2472057,2472173-2472334,
           2472565-2472681
          Length = 530

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -2

Query: 413 INTFLNSPLATMSMNFFSHSNTCFLKLHASRSLVMQTSQISL-FGPFGPSFI 261
           I+  + S   T+S N+F+H N   L  H+   +  +  Q+++ F  FG   I
Sbjct: 336 IDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYVKDKAMQVTIAFNHFGEGLI 387


>09_04_0687 +
           19465594-19465780,19465994-19466022,19466731-19466803,
           19467237-19467311,19467583-19467644,19467727-19467795,
           19468447-19468475,19468553-19468760,19468867-19469100,
           19469591-19470598
          Length = 657

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 556 SPYRSKVNVADQRNNQMPSPRKRNQIRTTRK 648
           SP +   NV D R+N++PSP + +   +  K
Sbjct: 409 SPLQPSTNVGDLRDNKLPSPTRLSNAHSVLK 439


>01_01_1114 - 8820996-8821538,8826753-8827178
          Length = 322

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -3

Query: 286 SDRSV-PHLFVITNIKAFQQHIRVNFIFIHPS 194
           SD S+ PH+  ++N+    Q I+V+ I I+P+
Sbjct: 23  SDESLRPHVLAVSNLDLLPQSIQVSMICIYPN 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,315,110
Number of Sequences: 37544
Number of extensions: 376487
Number of successful extensions: 1025
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)