Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20344
         (795 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55632| Best HMM Match : Vicilin_N (HMM E-Value=8.1)                 31   1.1  
SB_36083| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  
SB_29101| Best HMM Match : 7tm_1 (HMM E-Value=0)                       29   4.3  
SB_27582| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_37127| Best HMM Match : DUF352 (HMM E-Value=3.3)                    29   4.3  
SB_56834| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)          29   5.7  
SB_9125| Best HMM Match : Sulfotransfer_2 (HMM E-Value=1.4013e-45)     29   5.7  

>SB_55632| Best HMM Match : Vicilin_N (HMM E-Value=8.1)
          Length = 148

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 17/74 (22%), Positives = 30/74 (40%)
 Frame = -2

Query: 260 CDY*YQSIPTAYPRKLHFHSSKCTQNLNLCNTLQKDSTGKGRDSPSPQYRQTPSLYHDSN 81
           C   Y+++ T      H  + +C Q     +T  ++ST    +  + QYR   +   +S 
Sbjct: 19  CAQQYRTVRTTVQNSTHNSTEQCAQQYRTVHTTVQNSTHNSTEQCAQQYRTVRTTVQNSA 78

Query: 80  ITLTNKVPYVTMTV 39
              T + P    TV
Sbjct: 79  HNSTEQYPQQHRTV 92


>SB_36083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 458

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 164 LQKDSTGKGRDSPSPQYRQTPSLYHDSNI 78
           L +D+  + R S SP+  Q P  YH  NI
Sbjct: 380 LHRDTGNRSRRSSSPEQHQGPVFYHQENI 408


>SB_29101| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 350

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 2/77 (2%)
 Frame = -2

Query: 419 W*INTFLNSP--LATMSMNFFSHSNTCFLKLHASRSLVMQTSQISLFGPFGPSFICDY*Y 246
           W     L++P  L      +    + CF+   A+   +  T  I  FGP G    C Y  
Sbjct: 132 WLFAILLSTPPLLGWGQYGYVKEQSFCFVIWSANIYYMFFTVIICFFGPLGTMAFCYYKI 191

Query: 245 QSIPTAYPRKLHFHSSK 195
            S   A   +LH  S K
Sbjct: 192 LSFTKALKARLHKDSEK 208


>SB_27582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +1

Query: 451 EDEIQADESEYLEEDPDFGATSH*NERSLNQRYLLS-PYRSKVNVADQRNNQMPSPRKRN 627
           EDE+ + E  Y  +     A +H  E    + YL S P  +     DQ++N++ S R+R 
Sbjct: 20  EDEVNSQEKGYQRKSVK-RAAAHYYETK-RRLYLASLPANADKAAKDQQSNKLRSRRQRL 77

Query: 628 QIRTTRKLN 654
             R  RKL+
Sbjct: 78  MARLQRKLD 86


>SB_37127| Best HMM Match : DUF352 (HMM E-Value=3.3)
          Length = 256

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/66 (21%), Positives = 26/66 (39%)
 Frame = -2

Query: 260 CDY*YQSIPTAYPRKLHFHSSKCTQNLNLCNTLQKDSTGKGRDSPSPQYRQTPSLYHDSN 81
           C   Y+++ T      H  + +C Q      T  ++ST    +  + QYR   +   +S 
Sbjct: 184 CAQQYRTVHTTVQNSAHNSTEQCAQQYRTVRTTAQNSTHNSTEQSTQQYRTVRTTVQNST 243

Query: 80  ITLTNK 63
              T +
Sbjct: 244 HNSTEQ 249


>SB_56834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 552

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 436 EEVGPEDEIQADESEYLEEDPDFGAT 513
           EE   ED  +++ESEYLEE P   +T
Sbjct: 427 EEEEEEDSDESEESEYLEEQPSRRST 452


>SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)
          Length = 1163

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -3

Query: 187 RT*IFVTPFRKTAPAKAGILLHHNIVK--LHHYI-TILT*H 74
           R+ +F TP    AP  + +L HH I     HHYI +I+T H
Sbjct: 788 RSVLFTTPQPSYAPQPSLLLTHHYIFSTITHHYIFSIITHH 828


>SB_9125| Best HMM Match : Sulfotransfer_2 (HMM E-Value=1.4013e-45)
          Length = 480

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +3

Query: 405 SINLPSTHEI*RSWPRRRNTS**I*VSRRGSRLRSDEPLKREEPQPTVSAEPLQI 569
           S  LP +H +    P R+ T      SR+G+  R   P ++  P  TVS +PL +
Sbjct: 247 SCKLPYSHMV---TPTRKGTP-----SRKGTPSRKGTPTRKGTPSQTVSGKPLDV 293


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,160,056
Number of Sequences: 59808
Number of extensions: 468166
Number of successful extensions: 1309
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1304
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)