Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20344
         (795 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g58200.2 68414.m06607 mechanosensitive ion channel domain-con...    28   6.2  
At1g58200.1 68414.m06606 mechanosensitive ion channel domain-con...    28   6.2  
At5g04940.2 68418.m00523 SET domain-containing protein (SUVH1) c...    28   8.2  
At5g04940.1 68418.m00522 SET domain-containing protein (SUVH1) c...    28   8.2  
At3g54310.1 68416.m06002 hypothetical protein predicted protein,...    28   8.2  
At3g03130.1 68416.m00309 expressed protein ; expression supporte...    28   8.2  

>At1g58200.2 68414.m06607 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 678

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 523 NERSLNQRYLLSPYRSKVNVADQRNNQMPSPRKRN 627
           N+ ++N+RY+L     K+N  D   +  PSP +++
Sbjct: 478 NQAAMNRRYMLIEPSYKINSDDNSKSPSPSPGQKS 512


>At1g58200.1 68414.m06606 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 678

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 523 NERSLNQRYLLSPYRSKVNVADQRNNQMPSPRKRN 627
           N+ ++N+RY+L     K+N  D   +  PSP +++
Sbjct: 478 NQAAMNRRYMLIEPSYKINSDDNSKSPSPSPGQKS 512


>At5g04940.2 68418.m00523 SET domain-containing protein (SUVH1)
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain; identical to
           cDNA SUVH1 (SUVH1)  GI:13517742
          Length = 670

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/61 (26%), Positives = 24/61 (39%)
 Frame = -2

Query: 284 GPFGPSFICDY*YQSIPTAYPRKLHFHSSKCTQNLNLCNTLQKDSTGKGRDSPSPQYRQT 105
           G   P F+C   +   P  +     F SS+  Q+    N  Q     +   +P P Y+Q 
Sbjct: 30  GNQAPPFVCAPPFGPFPPGFSSFYPFSSSQANQHTPDLNQAQYPPQHQQPQNPPPVYQQQ 89

Query: 104 P 102
           P
Sbjct: 90  P 90


>At5g04940.1 68418.m00522 SET domain-containing protein (SUVH1)
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain; identical to
           cDNA SUVH1 (SUVH1)  GI:13517742
          Length = 670

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/61 (26%), Positives = 24/61 (39%)
 Frame = -2

Query: 284 GPFGPSFICDY*YQSIPTAYPRKLHFHSSKCTQNLNLCNTLQKDSTGKGRDSPSPQYRQT 105
           G   P F+C   +   P  +     F SS+  Q+    N  Q     +   +P P Y+Q 
Sbjct: 30  GNQAPPFVCAPPFGPFPPGFSSFYPFSSSQANQHTPDLNQAQYPPQHQQPQNPPPVYQQQ 89

Query: 104 P 102
           P
Sbjct: 90  P 90


>At3g54310.1 68416.m06002 hypothetical protein predicted protein,
           Arabidopsis thaliana
          Length = 358

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 360 AFKHLFLEVTCISESCDANLADQSIRTVRSL 268
           A +HL L+V+C+ +  D  L   S RT+ +L
Sbjct: 208 ALRHLNLDVSCLDQDLDMRLMVDSKRTLTNL 238


>At3g03130.1 68416.m00309 expressed protein ; expression supported
           by MPSS
          Length = 520

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = +1

Query: 436 EEVGPEDEIQADESEYLEEDP----DFGATSH*NERSLNQRYLLSPYRSKVN 579
           E++  + E +++E+EY E DP    DFG   H N+ +   +   S   SKV+
Sbjct: 313 EQMKIDSESESEETEY-ETDPWEGDDFGVAVHTNQEAFESKVSASDNVSKVD 363


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,935,556
Number of Sequences: 28952
Number of extensions: 318236
Number of successful extensions: 947
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)